FC876406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2BWT_HUMAN (Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16 Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = 3 Query: 264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 521 +++ Y +VLKQVH + +S +A+ +M+S ++DI +++A EA RLAR K+ TIT+ E + AVRL+LPG++ K A SEGTKAV + Sbjct: 79 DSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGRLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLR 164
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2BFM_HUMAN (Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16 Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = 3 Query: 264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 521 +++ Y +VLKQVH + +S +A+ +M+S I+DI +++A EA +LA Y K+ TITSR+IQ AVRL+LPG++ K A ++GT A + Sbjct: 161 DSFTPYFPRVLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 246
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2BV_BOVIN (Histone H2B subacrosomal variant OS=Bos taurus GN=SUBH2BV PE=1 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16 Identity = 41/91 (45.05%), Postives = 64/91 (70.33%), Query Frame = 3 Query: 261 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533 + Y +YI +VLK+V P GISS+ + I+N+ IND+FE+++ EA L Y K+ T+T +I+ AV L+LP +LAK+AV+ G +AV ++ S Sbjct: 32 LRNYSLYINRVLKEVVPQKGISSRTIDIINTMINDMFERISTEACNLMYYRKRCTLTPEDIEKAVYLLLPEKLAKYAVAFGKEAVQRYVRS 122
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2BV_MOUSE (Histone H2B subacrosomal variant OS=Mus musculus GN=Subh2bv PE=1 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14 Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 3 Query: 270 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533 Y +YI +VLK+V P+ GISS ++ IMN INDIFE++A EA + K+ T+T +IQ AV L+LP +LA AV+ G+KAV +F S Sbjct: 36 YSLYINRVLKEVVPNRGISSYSVDIMNILINDIFERIATEACQQMFLRKRCTLTPGDIQQAVHLLLPKKLATLAVTFGSKAVHRFIHS 123
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2BV1_DICDI (Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13 Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 3 Query: 276 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533 IYI K++KQ++P I K++ I+ S I D + EA L + + K T+++R++QT+VRL GE+++HAVSEG K VT F S+ Sbjct: 18 IYIKKLIKQINPACRIQVKSVQILTSLIRDTTISIMNEAFHLVQLSNKRTLSARDVQTSVRLCTVGEISRHAVSEGVKRVTNFNSA 103 The following BLAST results are available for this feature:
BLAST of FC876406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 205
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876406 ID=FC876406; Name=FC876406; organism=Citrus clementina; type=EST; length=724bpback to top |