FC876407

Overview
NameFC876407
Unique NameFC876407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876407 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.083e-59
Identity = 86/105 (81.90%), Postives = 96/105 (91.43%), Query Frame = 1
Query:  286 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENN 600
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENN
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENN 105          

HSP 2 Score: 63.5438 bits (153), Expect = 7.083e-59
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 3
Query:  606 ARVLVVCSEITAVTFRGPADTHLDSLVGQALXGDGAAAV 722
            ARVL+VCSE TAVTFRGP++T +DSLVGQAL  DGAAA+
Sbjct:  108 ARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAI 146          
BLAST of FC876407 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.081e-53
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1
Query:  370 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENN 600
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENN
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENN 77          

HSP 2 Score: 76.2554 bits (186), Expect = 1.081e-53
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 3
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDSLVGQALXGDGAAAV 722
            +GARVLVVCSE+TAVTFRGP+DTHLDSLVGQAL GDGAAA+
Sbjct:   78 KGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAAL 118          
BLAST of FC876407 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.295e-40
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1
Query:  427 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENN 600
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENN
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENN 57          

HSP 2 Score: 76.2554 bits (186), Expect = 5.295e-40
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 3
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDSLVGQALXGDGAAAV 722
            +GARVLVVCSE+TAVTFRGP+DTHLDSLVGQAL GDGAAA+
Sbjct:   58 KGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAAL 98          
BLAST of FC876407 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.572e-24
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 3
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDSLVGQALXGDGAAAV 722
            +GARVLVVCSEITAVTFRGP+DTHLDSLVGQAL GDGAAAV
Sbjct:   25 KGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAV 65          

HSP 2 Score: 53.1434 bits (126), Expect = 3.572e-24
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 1
Query:  529 MMYQQGCFAGGTVLRLAKDLAENN 600
            MMYQQGCFAGGTVLRLAKDLAENN
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENN 24          
BLAST of FC876407 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.848e-18
Identity = 54/196 (27.55%), Postives = 99/196 (50.51%), Query Frame = 1
Query:    7 TLTKHEPQTYSLRVQLEMATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAE 594
            ++ +H+ Q   ++V ++       R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+
Sbjct: 2755 SVQQHQKQQQKVQV-IQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAK 2945          

HSP 2 Score: 26.9498 bits (58), Expect = 3.848e-18
Identity = 13/37 (35.14%), Postives = 22/37 (59.46%), Query Frame = 3
Query:  609 RVLVVCSEITAVTFRGPADTHLDSLVGQALXGDGAAA 719
            R+LVVC+E+ ++ F        D +V  ++  DG+AA
Sbjct: 2951 RILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAA 2985          
The following BLAST results are available for this feature:
BLAST of FC876407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY7.083e-5981.90Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA1.081e-5394.81Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA5.295e-4091.38Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO3.572e-2492.68Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI3.848e-1827.55Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC32004D06EF DevOvary1 Citrus clementina cDNA clone C32004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876407 ID=FC876407; Name=FC876407; organism=Citrus clementina; type=EST; length=723bp
GAGTGCACACTCACCAAGCACGAGCCACAAACATATTCATTAAGGGTTCA
ACTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACG
GCCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTC
AACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCA
TATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGA
TTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCC
AACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGT
GGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCA
AAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACC
ACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGAT
CGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTT
TCGCCGGTGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAAC
AGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCGGTCACTTTC
CGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGGCAGGCTTTGNT
CGGTGATGGTGCTGCTGCTGTGA
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