FC876409

Overview
NameFC876409
Unique NameFC876409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13923 contig Ccv1_Contig13923:55..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_STAES (Pyruvate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pyk PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGN--DVTCVIKNT 660
            TKIV T+GP S S +++   + AGM+VAR +FS G+ E H+  ++ ++   K   K   ++LDT GPE++  N  +  I L+    V+++ +   E T +   + ++ L   V  G  I +   L        V L+V E+  +  +V C I NT
Sbjct:    4 TKIVCTIGPASESEEMLEKLMNAGMNVARLNFSHGSHEEHKARIDTIRKVAKRLNKTIGLLLDTKGPEIRTHNMKDGLIVLEKGKEVIVSMN-EVEGTPEKFSVTYENLINDVNIGSYILLDDGL--------VELQVKEINKDKGEVKCDILNT 149          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_STAEQ (Pyruvate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pyk PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGN--DVTCVIKNT 660
            TKIV T+GP S S +++   + AGM+VAR +FS G+ E H+  ++ ++   K   K   ++LDT GPE++  N  +  I L+    V+++ +   E T +   + ++ L   V  G  I +   L        V L+V E+  +  +V C I NT
Sbjct:    4 TKIVCTIGPASESEEMLEKLMNAGMNVARLNFSHGSHEEHKARIDTIRKVAKRLNKTIGLLLDTKGPEIRTHNMKDGLIVLEKGKEVIVSMN-EVEGTPEKFSVTYENLINDVNIGSYILLDDGL--------VELQVKEINKDKGEVKCDILNT 149          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_ASPNG (Pyruvate kinase OS=Aspergillus niger GN=pkiA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 49/153 (32.03%), Postives = 86/153 (56.21%), Query Frame = 1
Query:  121 SSHLLLEEPIRMASILEPSKASFFPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT-TKKLCAVMLDTVGPELQVVN-KSEKAISLKADGSVVLTPDCGQEATS---QVLPINFDGLAKSVKKGDTIFI 564
            S+ + LE   ++ + + PSK       T I+GT+GPK+ SV+ I+    AG++V R +FS G+ +YHQ  ++N + A KT   +  A+ LDT GPE++  N   +K I +K    + +T D  Q AT+   + + +++  + K +  G  I++
Sbjct:   11 SNRMKLEWHSKLNTEMVPSKNF---RRTSIIGTIGPKTNSVEKINSLRTAGLNVVRMNFSHGSYQYHQSVIDNAREAAKTQVGRPLAIALDTKGPEIRTGNTPDDKDIPIKQGHELNITTD-EQYATASDDKNMYLDYKNITKVISPGKLIYV 159          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_DROME (Pyruvate kinase OS=Drosophila melanogaster GN=PyK PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 49/164 (29.88%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  199 MTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT-TKKL-----CAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLT--PDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKN 657
            ++ IV T+GP S SV+++   +  GM++AR +FS G+ EYH  T+ N++ AVK  + KL      A+ LDT GPE++   +       I LK    + LT   +  ++ + +++ ++++ +   VK G+ +F+   L +        L V EV  + +TC ++N
Sbjct:   47 LSGIVCTIGPASSSVEMLEKMMATGMNIARMNFSHGSHEYHAATVANVRQAVKNYSAKLGYEHPVAIALDTKGPEIRTGLIGGSGTAEIELKKGEKIKLTTNKEFLEKGSLEIVYVDYENIVNVVKPGNRVFVDDGLIS--------LIVREVGKDSLTCEVEN 202          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYM_PONAB (Pyruvate kinase isozyme M1 OS=Pongo abelii GN=PKM2 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 582
            T I+ T+GP SRSV+ +   +K+GM+VAR +FS G  EYH ET++N++ A ++        +  AV LDT GPE++   +       + LK   ++ +T D    ++    +L +++  + K V+ G  I++   L +
Sbjct:   45 TGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLIS 182          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYM_MOUSE (Pyruvate kinase isozymes M1/M2 OS=Mus musculus GN=Pkm2 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 43/138 (31.16%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 582
            T I+ T+GP SRSV+++   +K+GM+VAR +FS G  EYH ET++N++ A ++        +  AV LDT GPE++   +       + LK   ++ +T D    ++    +L +++  + K V+ G  I++   L +
Sbjct:   45 TGIICTIGPASRSVEMLKEMIKSGMNVARLNFSHGTHEYHAETIKNVREATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLIS 182          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYM_HUMAN (Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=PKM2 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 582
            T I+ T+GP SRSV+ +   +K+GM+VAR +FS G  EYH ET++N++ A ++        +  AV LDT GPE++   +       + LK   ++ +T D    ++    +L +++  + K V+ G  I++   L +
Sbjct:   45 TGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLIS 182          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_XENLA (Pyruvate kinase muscle isozyme OS=Xenopus laevis GN=pkm PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 44/138 (31.88%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTK------KLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 582
            T I+ T+GP SRSV+++   +K+GM++AR +FS G  EYH  T++N++ A ++        +  AV LDT GPE++   +       + LK   ++ +T D    +     VL +++  L K VK G  I++   L +
Sbjct:   41 TGIICTIGPASRSVEMLKEMIKSGMNIARLNFSHGTHEYHAGTIKNVREATESLASNPIHYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATMRITLDDAFQENCDENVLWVDYKNLTKVVKPGSKIYVDDGLIS 178          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_CLOAB (Pyruvate kinase OS=Clostridium acetobutylicum GN=pyk PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQV--LPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNT 660
            TK++ T+GP S + ++++  +KAGM+ +R +FS G+   H   +  +K       K  A+ LDT GPE++  + +   + L+      +   CG+E         I++  L K VK G+TI I   L        V L V  ++G +V C + NT
Sbjct:    4 TKMIFTVGPASETEEIVTAFIKAGMNASRHNFSHGDHAEHGGRIALVKKVRAKLNKPVAICLDTKGPEIRTGDFNPSKLELQKGSKFTIV--CGEEIVGDATKCSISYKDLYKDVKPGNTILIDDGL--------VGLTVEAIEGTNVICTVANT 148          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_CHICK (Pyruvate kinase muscle isozyme OS=Gallus gallus GN=PKM2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 44/138 (31.88%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 582
            T I+ T+GP SRSVD +   +K+GM+VAR +FS G  EYH+ T++N++ A ++      T +  A+ LDT GPE++   +       + LK   ++ +T D    +     VL +++  L K +  G  I++   L +
Sbjct:   44 TGIICTIGPASRSVDKLKEMIKSGMNVARLNFSHGTHEYHEGTIKNVREATESFASDPITYRPVAIALDTKGPEIRTGLIKGSGTAEVELKKGAALKVTLDNAFMENCDENVLWVDYKNLIKVIDVGSKIYVDDGLIS 181          
The following BLAST results are available for this feature:
BLAST of FC876409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
KPYK_STAES4.017e-1330.97Pyruvate kinase OS=Staphylococcus epidermidis (str... [more]
KPYK_STAEQ4.017e-1330.97Pyruvate kinase OS=Staphylococcus epidermidis (str... [more]
KPYK_ASPNG6.852e-1332.03Pyruvate kinase OS=Aspergillus niger GN=pkiA PE=3 ... [more]
KPYK_DROME8.949e-1329.88Pyruvate kinase OS=Drosophila melanogaster GN=PyK ... [more]
KPYM_PONAB1.526e-1231.16Pyruvate kinase isozyme M1 OS=Pongo abelii GN=PKM2... [more]
KPYM_MOUSE1.526e-1231.16Pyruvate kinase isozymes M1/M2 OS=Mus musculus GN=... [more]
KPYM_HUMAN1.526e-1231.16Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=... [more]
KPYK_XENLA1.526e-1231.88Pyruvate kinase muscle isozyme OS=Xenopus laevis G... [more]
KPYK_CLOAB1.526e-1229.68Pyruvate kinase OS=Clostridium acetobutylicum GN=p... [more]
KPYK_CHICK1.526e-1231.88Pyruvate kinase muscle isozyme OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32004D10EF DevOvary1 Citrus clementina cDNA clone C32004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876409 ID=FC876409; Name=FC876409; organism=Citrus clementina; type=EST; length=696bp
GATCGTAAGTATTAATCAACGAATAAACACTAAAAATCAAAACACTCTAA
TCAACGCTAACCGCTGCCTCTTTCATCTCTCGTACTCTCTCTGTATCTCT
CTGTTCAGTGAAAGATGCATTCAAGTCACTTGCTTCTCGAGGAGCCAATC
AGGATGGCTTCAATCCTGGAGCCATCCAAAGCCAGTTTCTTCCCGGCAAT
GACCAAAATTGTTGGAACGCTTGGTCCTAAATCTCGATCTGTTGATGTTA
TATCCGGTTGCCTCAAAGCTGGAATGTCTGTGGCTAGATTCGATTTCTCG
TGGGGTAATACTGAATACCACCAAGAGACCTTGGAGAATCTCAAGGCGGC
AGTTAAGACTACTAAGAAGCTTTGTGCTGTTATGTTGGACACAGTGGGTC
CCGAATTGCAGGTTGTTAATAAGAGTGAGAAGGCAATTTCACTTAAGGCA
GATGGTTCTGTTGTTCTCACACCTGACTGTGGACAAGAAGCCACTTCTCA
AGTTTTGCCCATCAATTTCGATGGACTTGCTAAGTCAGTGAAGAAAGGAG
ACACCATTTTTATCGGTCAATACTTGTTCACTGGAAGTGAGACTACTTCT
GTGTGGCTGGAGGTTTCTGAAGTGAAAGGAAATGATGTAACTTGTGTGAT
AAAGAATACTGCACATTGGCTGGTTCACTTTTCACTTTACATGCTC
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