FC876410

Overview
NameFC876410
Unique NameFC876410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.197e-19
Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCY-FSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L N+MDAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS  C+   +              TY  NGT  AI YGTG++SGF S
Sbjct:   70 LKNYMDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSVHCHLLDIACLLHHKYDASKSSTYVENGTEFAIHYGTGSLSGFLS 151          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.197e-19
Identity = 57/148 (38.51%), Postives = 76/148 (51.35%), Query Frame = 1
Query:  202 LILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETM-RTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L+L     A P   LVRI L K     + R + +     E+ + + P+ +Y               L N+MDAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS  C    +              TY +NGTS  I YG+G++SG+ S
Sbjct:    7 LLLVLGLLAAPAAALVRIPLHK--FTSVRRTMTELGGPVEDLIAKGPISKYAQGAPAVTGGPIPEMLRNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTSFDIHYGSGSLSGYLS 152          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: RENI_PANTR (Renin OS=Pan troglodytes GN=REN PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.587e-18
Identity = 54/152 (35.53%), Postives = 75/152 (49.34%), Query Frame = 1
Query:  196 LFLILSPAAFALPNDGLVRIGLRKKKLDQINRLV---GQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L L+     F LP D      +  K++  I   +   G  +++       P++R  L  +     T  V L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC                   +Y  NGT   ++Y TG +SGF S
Sbjct:   13 LLLLWGSCTFGLPTDTTTFKRIFLKRMPSIRESLKERGVDMARLGPEWSQPMKRLTLGNT-----TSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLS 159          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: RENI_HUMAN (Renin OS=Homo sapiens GN=REN PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.587e-18
Identity = 54/152 (35.53%), Postives = 75/152 (49.34%), Query Frame = 1
Query:  196 LFLILSPAAFALPNDGLVRIGLRKKKLDQINRLV---GQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L L+     F LP D      +  K++  I   +   G  +++       P++R  L  +     T  V L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC                   +Y  NGT   ++Y TG +SGF S
Sbjct:   13 LLLLWGSCTFGLPTDTTTFKRIFLKRMPSIRESLKERGVDMARLGPEWSQPMKRLTLGNT-----TSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLS 159          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.587e-18
Identity = 51/135 (37.78%), Postives = 70/135 (51.85%), Query Frame = 1
Query:  292 LVGQTVSKEEETMRTPVRRYNL------------------HGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L+G    +E + +R P++R +L                    S    +   V L+ FM+ QYFG + +GTP Q FTV+FDTGSSNLWVPS +C +FS+              ++  NGT  AIQYGTG +SG  S
Sbjct:   12 LLGNLEPEEAKLIRVPLQRIHLGHRILNPLNGWEQLAELSRTSTSGGNPSFVPLSKFMNTQYFGTIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNGTKFAIQYGTGRLSGILS 146          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: RENI_MACMU (Renin OS=Macaca mulatta GN=REN PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.072e-18
Identity = 53/152 (34.87%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  196 LFLILSPAAFALPNDGLVRIGLRKKKLDQINRLV---GQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L L+     F LP D      +  K++  I   +   G  +++       P++R     +LG++ + ++ L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC                   +Y  NGT   ++Y TG +SGF S
Sbjct:   13 LLLLWGSCTFGLPTDTTTFKRIFLKRMPSIRESLKERGVDMARLGPEWSQPMKRL----ALGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLS 159          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: RENI_MACFA (Renin OS=Macaca fascicularis GN=REN PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.072e-18
Identity = 53/152 (34.87%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  196 LFLILSPAAFALPNDGLVRIGLRKKKLDQINRLV---GQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L L+     F LP D      +  K++  I   +   G  +++       P++R     +LG++ + ++ L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC                   +Y  NGT   ++Y TG +SGF S
Sbjct:   13 LLLLWGSCTFGLPTDTTTFKRIFLKRMPSIRESLKERGVDMARLGPEWSQPMKRL----ALGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLS 159          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.706e-18
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L N+MDAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS  C    +              TY +NGT+ AI YG+G++SG+ S
Sbjct:    7 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTTFAIHYGSGSLSGYLS 88          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.535e-18
Identity = 44/84 (52.38%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  391 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            V L+N+ D QYFGE+ +GTP Q FTV FDTGSSNLWVPS +C +FSV              ++  NGT  AIQYGTG + G  S
Sbjct:   68 VPLSNYRDVQYFGEIGLGTPPQNFTVAFDTGSSNLWVPSRRCHFFSVPCWLHHRFDPKASSSFQANGTKFAIQYGTGRVDGILS 151          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.535e-18
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  391 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            V + NFM+AQYF E++IGTP QTF V+ DTGSSNLWVPS++C  S+              TY +NGTS  I+YG+G++SGF S
Sbjct:   75 VPITNFMNAQYFSEITIGTPPQTFKVVLDTGSSNLWVPSSQC-GSIACYLHNKYESSESSTYKKNGTSFKIEYGSGSLSGFVS 156          
The following BLAST results are available for this feature:
BLAST of FC876410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CATD_CHICK3.197e-1954.88Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATD_CANFA3.197e-1938.51Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
RENI_PANTR1.587e-1835.53Renin OS=Pan troglodytes GN=REN PE=3 SV=1[more]
RENI_HUMAN1.587e-1835.53Renin OS=Homo sapiens GN=REN PE=1 SV=1[more]
NAPSA_MOUSE1.587e-1837.78Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
RENI_MACMU2.072e-1834.87Renin OS=Macaca mulatta GN=REN PE=2 SV=2[more]
RENI_MACFA2.072e-1834.87Renin OS=Macaca fascicularis GN=REN PE=2 SV=1[more]
CATD_PIG2.706e-1852.44Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
NAPSA_HUMAN3.535e-1852.38Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CARP_NEUCR3.535e-1853.01Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]

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Properties
Property NameValue
Genbank descriptionC32004D11EF DevOvary1 Citrus clementina cDNA clone C32004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876410 ID=FC876410; Name=FC876410; organism=Citrus clementina; type=EST; length=639bp
GAAAACAATTCAAACTCGAATTAACGGCCAAAGCACATACTCCAGAAACG
CATTTTATTCGCTTTTCTTTCTTTATTCTGACCCTCGATTTCTCGGTCTC
GTCAGTCCACTTCTTTACTCTGTCTGTGCTCTTTTGAAAGATACTCAGTT
GTCGACATGGGAACCAAATTCACAGCCATTCGGGTTGCACTTTTTCTTTT
TCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCCAAATGATGGATTGGTAA
GAATTGGGCTGAGAAAGAAGAAATTGGATCAGATCAATCGCCTTGTTGGA
CAGACTGTATCTAAGGAAGAGGAAACGATGAGAACACCTGTCAGAAGATA
TAATCTCCATGGTAGTCTTGGAGATTCTGATACTGATATTGTTGCATTAA
ATAACTTTATGGATGCTCAGTATTTTGGGGAGGTTAGTATTGGCACACCT
TCCCAGACCTTCACTGTGATATTTGACACAGGAAGTTCTAATCTTTGGGT
GCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTGCTATTTCCACTCCAAGT
ATAAGTCCAGCCATTCAAGTACCTACNAAAGGAATGGGACATCTGCCGCA
ATCCAATATGGGACTGGAGCAATTTCTGGTTTCTTTAGC
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