FC876410

Overview
NameFC876410
Unique NameFC876410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10351 contig Ccv1_Contig10351:1..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S+              TY     + +I YGTG+++G
Sbjct:   68 LENYLDVEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACTNHNLFNPQDSSTYQSTSGTLSITYGTGSMTG 144          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA_HUMAN (Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N++D +YFG + IGTP+Q FTV+FDTGSSNLWVPS  C  S+              TY     + +I YGTG+++G
Sbjct:   68 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYC-SSLACTNHNRFNPEDSSTYQSTSETVSITYGTGSMTG 144          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S+              TY     + +I YGTG+++G
Sbjct:   68 LENYLDMEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACTNHNRFNPQDSSTYQSTSGTVSITYGTGSMTG 144          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S+              TY     + +I YGTG+++G
Sbjct:   68 LENYLDVEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACTNHNLFNPQDSSTYQSTSGTLSITYGTGSMTG 144          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPC_RABIT (Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.007e-13
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  403 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFF 636
            +++DA YFGE+SIGTPSQ F V+FDTGSSNLWVPS  C  S               T+     + +++YG+G+++GFF
Sbjct:   67 DYLDAAYFGEISIGTPSQNFLVLFDTGSSNLWVPSVYCQ-SEACTTHNRFNPSKSSTFYTYDQTFSLEYGSGSLTGFF 143          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA_CHICK (Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            + N+MDA Y+G +SIGTP Q F+VIFDTGSSNLWVPS  C  S               TY     +  I YGTG++SG
Sbjct:   51 MTNYMDASYYGTISIGTPQQDFSVIFDTGSSNLWVPSIYCKSSA-CSNHKRFDPSKSSTYVSTNETVYIAYGTGSMSG 127          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA_CANFA (Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 38/79 (48.10%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  394 ALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            +L N+MD +YFG + IGTP Q FTVIFDTGSSNLWVPS  C  S               TY       +I YGTG+++G
Sbjct:   65 SLKNYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYC-SSPACSNHNRFNPQESSTYQGTNRPVSIAYGTGSMTG 142          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.471e-13
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S+              T+       +I YGTG+++G
Sbjct:   65 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTG 141          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.840e-13
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N+MD +YFG + IGTP Q FTVIFDTGSSNLWVPS  C  S               TY       ++ YGTG+++G
Sbjct:   66 LENYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYC-SSPACSNHNRFNPQQSSTYQGTNQKLSVAYGTGSMTG 142          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA_SORUN (Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.627e-13
Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N+MD +YFG +SIGTP Q FTVIFDTGSSNLWVPS  C  S               T+     + +I YGTG+++G
Sbjct:   67 LVNYMDMEYFGTISIGTPPQEFTVIFDTGSSNLWVPSIYC-SSPACSNHNRFDPQKSSTFKPTSQTVSIAYGTGSMTG 143          
The following BLAST results are available for this feature:
BLAST of FC876410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PEPA_MACMU1.537e-1347.44Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA_HUMAN1.537e-1346.15Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1[more]
PEPA2_MACFU1.537e-1347.44Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1[more]
PEPA1_MACFU1.537e-1347.44Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
PEPC_RABIT2.007e-1346.15Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV... [more]
PEPA_CHICK2.621e-1348.72Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1[more]
PEPA_CANFA3.424e-1348.10Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1[more]
PEPA_PIG4.471e-1346.15Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
PEPA_RHIFE5.840e-1347.44Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
PEPA_SORUN7.627e-1348.72Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32004D11EF DevOvary1 Citrus clementina cDNA clone C32004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876410 ID=FC876410; Name=FC876410; organism=Citrus clementina; type=EST; length=639bp
GAAAACAATTCAAACTCGAATTAACGGCCAAAGCACATACTCCAGAAACG
CATTTTATTCGCTTTTCTTTCTTTATTCTGACCCTCGATTTCTCGGTCTC
GTCAGTCCACTTCTTTACTCTGTCTGTGCTCTTTTGAAAGATACTCAGTT
GTCGACATGGGAACCAAATTCACAGCCATTCGGGTTGCACTTTTTCTTTT
TCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCCAAATGATGGATTGGTAA
GAATTGGGCTGAGAAAGAAGAAATTGGATCAGATCAATCGCCTTGTTGGA
CAGACTGTATCTAAGGAAGAGGAAACGATGAGAACACCTGTCAGAAGATA
TAATCTCCATGGTAGTCTTGGAGATTCTGATACTGATATTGTTGCATTAA
ATAACTTTATGGATGCTCAGTATTTTGGGGAGGTTAGTATTGGCACACCT
TCCCAGACCTTCACTGTGATATTTGACACAGGAAGTTCTAATCTTTGGGT
GCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTGCTATTTCCACTCCAAGT
ATAAGTCCAGCCATTCAAGTACCTACNAAAGGAATGGGACATCTGCCGCA
ATCCAATATGGGACTGGAGCAATTTCTGGTTTCTTTAGC
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