FC876410

Overview
NameFC876410
Unique NameFC876410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10351 contig Ccv1_Contig10351:1..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.879e-11
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  373 DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCY 519
            DS + +VAL N  D  YFGE+ IGTP Q FTVIFDTGSS LWVPS+K +
Sbjct:    1 DSGSAVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKAH 49          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PLM2_PLAFA (Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 1
Query:  376 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            S  D + L +F +  ++G+  +G   Q FT I DTGS+NLWVPS KC  +               TY ++GT   + Y +G +SGFFS
Sbjct:  125 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKC-TTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFS 211          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  373 DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCY 519
            DS + +VAL N  D  Y+GE+ IGTP Q FTVIFDTGSS LWVPS+K +
Sbjct:    2 DSGSAVVALTNDRDTSYYGEIGIGTPPQKFTVIFDTGSSVLWVPSSKAH 50          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPAF_RABIT (Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.139e-11
Identity = 37/97 (38.14%), Postives = 48/97 (49.48%), Query Frame = 1
Query:  349 YNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            Y L     D D     L N++D  Y G +SIGTP Q F V+ DTGS++LWVPS  C  S               T+  +G    I YG+G +SGF +
Sbjct:   50 YKLLSGQQDPDVSFEPLRNYLDLAYIGIISIGTPPQEFKVVLDTGSADLWVPSIYC-SSPACGKHNTFNPLLSSTFLVSGRPINIVYGSGRMSGFLA 145          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  403 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAIS 627
            N++D+ YFGE+SIGTP Q F ++FDTGSSNLWVPS  C  S               TY  +  +  + YG G+++
Sbjct:   68 NYLDSYYFGEISIGTPPQNFLILFDTGSSNLWVPSTYCQ-SQACSNHNRFNPSRSSTYQSSEQTYTLAYGFGSLT 141          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PAG_HORSE (Pregnancy-associated glycoprotein OS=Equus caballus GN=PAG PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11
Identity = 35/87 (40.23%), Postives = 46/87 (52.87%), Query Frame = 1
Query:  373 DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGF 633
            DS      + N++D  Y G +S+GTP Q F VIFDTGS++LWVPS  C  S               T+  +G    + YGTG +SGF
Sbjct:   58 DSGVAFEPMRNYLDIAYMGIISVGTPPQEFQVIFDTGSADLWVPSIYC-SSPACSNHNTFNPLRSSTFVASGQPIKLIYGTGKMSGF 143          
The following BLAST results are available for this feature:
BLAST of FC876410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CARDH_CYNCA1.879e-1165.31Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PLM2_PLAFA4.185e-1137.50Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1[more]
CARDF_CYNCA4.185e-1163.27Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PEPAF_RABIT7.139e-1138.14Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPB_CANFA9.324e-1142.67Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]
PAG_HORSE9.324e-1140.23Pregnancy-associated glycoprotein OS=Equus caballu... [more]

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Properties
Property NameValue
Genbank descriptionC32004D11EF DevOvary1 Citrus clementina cDNA clone C32004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876410 ID=FC876410; Name=FC876410; organism=Citrus clementina; type=EST; length=639bp
GAAAACAATTCAAACTCGAATTAACGGCCAAAGCACATACTCCAGAAACG
CATTTTATTCGCTTTTCTTTCTTTATTCTGACCCTCGATTTCTCGGTCTC
GTCAGTCCACTTCTTTACTCTGTCTGTGCTCTTTTGAAAGATACTCAGTT
GTCGACATGGGAACCAAATTCACAGCCATTCGGGTTGCACTTTTTCTTTT
TCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCCAAATGATGGATTGGTAA
GAATTGGGCTGAGAAAGAAGAAATTGGATCAGATCAATCGCCTTGTTGGA
CAGACTGTATCTAAGGAAGAGGAAACGATGAGAACACCTGTCAGAAGATA
TAATCTCCATGGTAGTCTTGGAGATTCTGATACTGATATTGTTGCATTAA
ATAACTTTATGGATGCTCAGTATTTTGGGGAGGTTAGTATTGGCACACCT
TCCCAGACCTTCACTGTGATATTTGACACAGGAAGTTCTAATCTTTGGGT
GCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTGCTATTTCCACTCCAAGT
ATAAGTCCAGCCATTCAAGTACCTACNAAAGGAATGGGACATCTGCCGCA
ATCCAATATGGGACTGGAGCAATTTCTGGTTTCTTTAGC
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