FC876413

Overview
NameFC876413
Unique NameFC876413
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10354 contig Ccv1_Contig10354:1..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.311e-24
Identity = 67/169 (39.64%), Postives = 90/169 (53.25%), Query Frame = 1
Query:  142 NKNAFKALITAEYTGVNVELVK---NFEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            N  AFKALI A+Y+G  V ++    +F  G TN TPEFL+  P GKVP  E  DG  +FESNAIA YV+    +  L GS+   +A + QW+ F+  +I      W  P +G   Y  QA E             + HL + T+LVG  VTLADI + C L   + ++L
Sbjct:    7 NWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 171          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 5.630e-24
Identity = 68/178 (38.20%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  115 AMVLHAGNTNKNAFKALITAEYTGVNVELVK---NFEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            A  L+    N  AFKALI A+Y+G  V ++    +F  G TN+TPEFL+  P GKVP  E  DG  +FESNAIA YV+    +  L GS+   +A + QW+ F+  +I      W  P +G   +  QA E             + HL + T+LVG  VTLADI + C L   + ++L
Sbjct:    3 AGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_MACFA (Elongation factor 1-gamma OS=Macaca fascicularis GN=EEF1G PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.630e-24
Identity = 68/178 (38.20%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  115 AMVLHAGNTNKNAFKALITAEYTGVNVELVK---NFEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            A  L+    N  AFKALI A+Y+G  V ++    +F  G TN+TPEFL+  P GKVP  E  DG  +FESNAIA YV+    +  L GS+   +A + QW+ F+  +I      W  P +G   +  QA E             + HL + T+LVG  VTLADI + C L   + ++L
Sbjct:    3 AGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_HORSE (Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.630e-24
Identity = 68/178 (38.20%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  115 AMVLHAGNTNKNAFKALITAEYTGVNVELVK---NFEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            A  L+    N  AFKALI A+Y+G  V ++    +F  G TN+TPEFL+  P GKVP  E  DG  +FESNAIA YV+    +  L GS+   +A + QW+ F+  +I      W  P +G   +  QA E             + HL + T+LVG  VTLADI + C L   + ++L
Sbjct:    3 AGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_BOVIN (Elongation factor 1-gamma OS=Bos taurus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.630e-24
Identity = 68/178 (38.20%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  115 AMVLHAGNTNKNAFKALITAEYTGVNVELVK---NFEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            A  L+    N  AFKALI A+Y+G  V ++    +F  G TN+TPEFL+  P GKVP  E  DG  +FESNAIA YV+    +  L GS+   +A + QW+ F+  +I      W  P +G   +  QA E             + HL + T+LVG  VTLADI + C L   + ++L
Sbjct:    3 AGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_HUMAN (Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.794e-23
Identity = 67/178 (37.64%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  115 AMVLHAGNTNKNAFKALITAEYTGVNVELVK---NFEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            A  L+    N  AFKALI A+Y+G  V ++    +F  G TN+TPEFL+  P GKVP  E  DG  +FESNAIA YV+    +  L GS+   +A + QW+ F+  +I      W  P +G   +  QA E             + +L + T+LVG  VTLADI + C L   + ++L
Sbjct:    3 AGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAYLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1GB_XENLA (Elongation factor 1-gamma-B OS=Xenopus laevis GN=eef1g-B PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.365e-22
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = 1
Query:  142 NKNAFKALITAEYTGVNVELVKN---FEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSS-LIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            N  A+K LI A+Y+   +++  +   F+ G+TNKTPEFLK  P+GKVP  E  +G  +FES+AIA YVA    ++ L GS+  +  A + QW+ FS   +      W  P +G   +  QA E             + HL + T+LVG  +TLADI +TC+L   + ++L
Sbjct:   12 NWRAYKPLIAAQYSRFPIKVASSPPEFQFGLTNKTPEFLKKFPLGKVPAFEGNNGFCLFESSAIAHYVA----NDELRGSNNRLHQAQVIQWVGFSDSHVVPPASAWVFPTLGIMQFNKQATEQAKEEIKTVLGVLDCHLQTRTFLVGERITLADITLTCSLLWLYKQVL 177          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_CARAU (Elongation factor 1-gamma OS=Carassius auratus GN=eef1g PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 63/178 (35.39%), Postives = 93/178 (52.25%), Query Frame = 1
Query:  115 AMVLHAGNTNKNAFKALITAEYTGVNVELVKN---FEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            A  L+    N  AFKA I A+Y+G  +++      F  G TN++P FL   P+GKVP  +  DG  +FESNAIA +++    ++ L GS+   SA + QW+ F+  EI      W  P +G   +  QA E             N HL + T+LVG  V+LADI + C+L   + ++L
Sbjct:    3 AGTLYTYPENWRAFKAQIAAQYSGARLKIASASPAFTFGQTNRSPAFLSNFPLGKVPAYQGDDGFCLFESNAIAHFLS----NDALRGSTPQASAQVLQWVSFADSEIIPPASAWVFPTLGIMQFNKQATEQAKEEVKRVLAVLNQHLNTRTFLVGERVSLADITVVCSLLWLYKQVL 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21
Identity = 62/178 (34.83%), Postives = 93/178 (52.25%), Query Frame = 1
Query:  115 AMVLHAGNTNKNAFKALITAEYTGVNVELVKN---FEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            A  L+    N  AFKA I A+Y+G  +++      F  G TN++P FL   P+GKVP  +  DG  +FESNAIA Y++    ++ L GS+   SA + QW+ F+  E+      W  P +G   +  QA E             N HL + T+LVG  ++LADI + C+L   + ++L
Sbjct:    3 AGTLYTYPENWRAFKAQIAAQYSGARLKIASAPPAFTFGQTNRSPAFLGNFPLGKVPAYQGDDGFCLFESNAIAHYLS----NDVLRGSTPQASAQVLQWVSFADSEVIPPASAWVFPTLGIMQFNKQATEQAKEEVKRVLAVLNQHLNTRTFLVGERISLADITVVCSLLWLYKQVL 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_DROME (Elongation factor 1-gamma OS=Drosophila melanogaster GN=Ef1gamma PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.029e-18
Identity = 60/159 (37.74%), Postives = 81/159 (50.94%), Query Frame = 1
Query:  142 NKNAFKALITAEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDGP-IFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAE-EXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNL 612
            N  A+KALI A+Y+G  V++  NF+ G TNK+ EFLK  P GKVP  ET +G  + ESNAIA  +A  +      G      A ++QWI F+  EI      W  P +G    LPQ +               N  L   T+L G  +TLADI++  +L
Sbjct:   12 NFRAYKALIAAQYSGAQVKVADNFKFGETNKSAEFLKKFPGGKVPAFETAEGQYLSESNAIAYLLANEQLRG---GKCPFVQAQVQQWISFADNEIVPASCAWVFPLLGI---LPQQKNSTAKQEAEAVLQQLNQKLQDATFLAGERITLADIVVFSSL 164          
The following BLAST results are available for this feature:
BLAST of FC876413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G_PIG4.311e-2439.64Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]
EF1G_RABIT5.630e-2438.20Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]
EF1G_MACFA5.630e-2438.20Elongation factor 1-gamma OS=Macaca fascicularis G... [more]
EF1G_HORSE5.630e-2438.20Elongation factor 1-gamma OS=Equus caballus GN=EEF... [more]
EF1G_BOVIN5.630e-2438.20Elongation factor 1-gamma OS=Bos taurus GN=EEF1G P... [more]
EF1G_HUMAN2.794e-2337.64Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G... [more]
EF1GB_XENLA2.365e-2237.06Elongation factor 1-gamma-B OS=Xenopus laevis GN=e... [more]
EF1G_CARAU3.416e-2135.39Elongation factor 1-gamma OS=Carassius auratus GN=... [more]
EF1G_DANRE4.461e-2134.83Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]
EF1G_DROME6.029e-1837.74Elongation factor 1-gamma OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC32004E04EF DevOvary1 Citrus clementina cDNA clone C32004E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876413 ID=FC876413; Name=FC876413; organism=Citrus clementina; type=EST; length=639bp
GTACACGAATACTACACTCACTAAACCTCGCAAGACCAAGCCGTTGACAC
AATCGCTCTGATTCGCTGTTTGATCTTGGGTTGTTAACTGAAGTAAAATC
TTTCTGAAGCAATGGCTATGGTCTTGCATGCAGGGAACACCAATAAAAAT
GCTTTTAAAGCACTTATTACTGCAGAGTACACTGGGGTAAATGTTGAATT
GGTCAAGAATTTTGAGATGGGTGTAACAAACAAAACTCCTGAATTTCTTA
AGATGAATCCCATTGGAAAGGTTCCTGTGTTGGAAACACCTGATGGACCC
ATCTTCGAGAGTAATGCCATTGCACGATATGTTGCACGCTTGAAAGCTGA
CAACCCACTGTTGGGCTCGTCTTTAATTGATTCTGCTCATATTGAGCAGT
GGATTGATTTCTCATCATTAGAAATTGACACCAATATTTTGCGTTGGTTT
ATACCAAGAGTTGGTTTCGCGGTGTACCTTCCTCAGGCTGAGGAAGCTGC
AATTGCTTCTTTGAAGAGAGCTCTAGCTGCATTGAATACACATCTCGCTT
CCAACACTTACTTAGTTGGCCATTCAGTGACTTTGGCTGATATCATTATG
ACATGTAACTTGACGTTGGGATTCAGTCGGATCCTGACC
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