FC876416

Overview
NameFC876416
Unique NameFC876416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10356 contig Ccv1_Contig10356:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC4_ORYSJ (Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.101e-24
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  141 TRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHY-DGEFNLLLSDWWHRSVHE 587
            TRHY++ V+    +  C    ++ +NGQ PGP + AR GD + + +TN +    + +HWHG+RQ+ T WADG A I+QCPI  G++Y+Y F V  + GT ++H H+   R A +YG+L++    G   PF     E  ++  +WW+    E
Sbjct:   30 TRHYEFNVQMANATRLCNTKSMVTVNGQCPGPELVAREGDRVVIRVTNNV-AHNISLHWHGVRQVRTGWADGPAYITQCPIQTGQSYVYNFTVAGQRGTLWWHAHISWLR-ATVYGALVILPKLGVPYPFPAPHKEVPVIFGEWWNADTEE 178          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC21_ORYSJ (Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC21 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 59/171 (34.50%), Postives = 92/171 (53.80%), Query Frame = 3
Query:   81 VVTCWILMLCSVFETSYGSKTR-HYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYR-FKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVH 584
            ++ C +L        ++G +TR HY + +    +   C E  V+ +NGQFPGPTI AR GD + V + N    + + IHWHG+ Q   PW+DG   I+QCPI P   + Y+    ++ GT ++H H    R A + G+++V    G+  PF   D E  ++L +WW   V+
Sbjct:   12 LLACAVLTFAVAISPAHGGRTRRHYDFFITETNYRRLCHEKSVLTVNGQFPGPTIYARKGDLVIVNVYNH-GNKNITIHWHGVDQPRNPWSDGPEFITQCPIRPDGKFTYQVIMSEEEGTLWWHAHSDFDR-ATVLGAIVVHPKHGDTFPFKRPDKEIPIILGEWWKNDVN 180          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC7_ARATH (Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.878e-24
Identity = 60/172 (34.88%), Postives = 92/172 (53.49%), Query Frame = 3
Query:   72 VAVVVTCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSV 581
            V V + C +++L     TS  +    + + V+ +  S  CK  ++  +NG  PGPTIR + GD++ + + N      + IHWHGI    T WADG + I+QCPI PG+ Y YRF +  + GT ++H H    R A +YG+L++    G   PF     E  +L  +WW+  V
Sbjct:    4 VRVPIACALILLAISSITS--ASIVEHTFNVQNLTVSRLCKRQVITVVNGSLPGPTIRVKEGDSLVIHVLNHS-PHNITIHWHGIFHKLTVWADGPSMITQCPIQPGQRYAYRFNITGQEGTLWWHAHASFLR-ATVYGALVIRPKSGHSYPFPKPHKEVPILFGEWWNTDV 171          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC17_ARATH (Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.452e-24
Identity = 61/174 (35.06%), Postives = 98/174 (56.32%), Query Frame = 3
Query:   57 LGLRHVAVVVTCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFK-VDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWH 572
            + L+ +  V +C +L+    F       TRHY  E++    +  C    ++ +NGQFPGP + AR GD + +++ N++    + +HWHGIRQL + WADG A I+QCPI  G++Y+Y +  V + GT +YH H+   RS  +YG LI+    G   PF     E  ++  +W++
Sbjct:    1 MALQLLLAVFSCVLLLPQPAFGI-----TRHYTLEIKMQNVTRLCHTKSLVSVNGQFPGPKLIAREGDQVLIKVVNQV-PNNISLHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNYTIVGQRGTLWYHAHISWLRST-VYGPLIILPKRGVPYPFAKPHKEVPMIFGEWFN 167          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: PCOA_ECOLX (Copper resistance protein A OS=Escherichia coli GN=pcoA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  213 INGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVH 584
            ING  PGP +R + GDTI +++ N+L  E   IHWHGI        DG   +S   I P +TY+Y FKV + GTY+YH H G+Q   G+YG++I+D    E EPF YD E  ++LSDW   + H
Sbjct:   68 INGGLPGPVLRWKEGDTITLKVKNRL-NEQTSIHWHGIILPAN--MDGVPGLSFMGIEPDDTYVYTFKVKQNGTYWYHSHSGLQEQEGVYGAIIIDAR--EPEPFAYDREHVVMLSDWTDENPH 186          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC10_ORYSJ (Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.318e-24
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  132 GSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVD-KAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF---HYDGEFNLLLSDWWH 572
            G+ TR+Y + V+    +  C    +  +NG+FPGP I  R GD + V++ N +  + + IHWHG+RQ+ T W+DG A ++QCPI  G++Y+Y F ++ + GT F+H H+   RS  LYG +I+    G   PF   H D    ++  +W++
Sbjct:   28 GAATRYYTFNVKLQNVTRLCNTRAIPTVNGKFPGPKIVTREGDRVVVKVVNNI-KDNITIHWHGVRQMRTGWSDGPAYVTQCPIQTGQSYVYNFTINGQRGTLFWHAHVSWLRST-LYGPIIILPKAGLPLPFTEPHKD--VPIIFGEWFN 174          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSI (Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.217e-23
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYD-GEFNLLLSDWWHRSVHEAEVGLSSGHY 617
            C  + +  +NGQ PGPT+    GDT+ V + NK+   G+ IHWHG+RQL + WADG   I++CPI PG    YRF V D+ GT ++H H+   RS  + G+ I+   DG K PF     +  +++ +WW   + E +  +  G++
Sbjct:   41 CNTTKIFVVNGQLPGPTVDVTEGDTVVVHVVNKI-PHGLTIHWHGVRQLRSCWADGAGFITECPIPPGSERTYRFNVTDQVGTLWWHAHVTCLRST-INGAFIIRPRDG-KYPFPTPVKDVPIIIGEWWELDLVELDRRMRDGNF 182          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC6_ORYSJ (Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.589e-23
Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = 3
Query:  204 VMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDV--ADGEKEPFHYDGEFNLLLSDWWH 572
            V  +NG+ PGP + AR GDT+ + + N      V +HWHG+ Q GTPWADG A ++QCPI PG  Y YRF V  + GT ++H H    R A +YG+L++    A G   P  Y+ E  +LL +WW+
Sbjct:   47 VTAVNGRVPGPQVEAREGDTVVIHVINDS-PYNVTVHWHGVFQRGTPWADGPAMVTQCPIRPGHRYTYRFAVAGQEGTLWWHAHSSYMR-ATVYGALVIRPRRAGGYPFPTPYE-EKTVLLGEWWN 169          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC2_ARATH (Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.589e-23
Identity = 53/140 (37.86%), Postives = 87/140 (62.14%), Query Frame = 3
Query:   99 LMLCSVFETSYGSK------TRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV 497
            L++  +F  SY         TRHY+++++    +  CK   ++ +NG+FPGP + AR GD + +++ N + +  + IHWHGIRQL + WADG + ++QCPI  G++Y+Y F V  + GT ++H H+   R A +YG LI+
Sbjct:    9 LLVAFLFAISYNIDAASAGITRHYQFDIQLKNITRLCKTKTIVTVNGKFPGPRVTAREGDNLQIKVVNHV-SNNISIHWHGIRQLRSGWADGPSYVTQCPIRMGQSYVYNFTVTGQRGTLWWHAHIQWMR-ATVYGPLII 146          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSJ (Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.589e-23
Identity = 54/145 (37.24%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYD-GEFNLLLSDWWHRSVHEAEVGLSSGHY 617
            C  + +  +NGQ PGPT+    GDT+ + + NK+   G+ IHWHG+RQL + WADG   I++CPI PG    YRF V D+ GT ++H H+   RS  + G+ I+   DG K PF     +  +++ +WW   + E +  +  G++
Sbjct:   41 CNTTKIFVVNGQLPGPTVDVTEGDTVVIHVVNKI-PHGLTIHWHGVRQLRSCWADGAGFITECPIPPGSERTYRFNVTDQVGTLWWHAHVTCLRST-INGAFIIRPRDG-KYPFPTPVKDVPIIIGEWWELDLVELDRRMRDGNF 182          
The following BLAST results are available for this feature:
BLAST of FC876416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LAC4_ORYSJ1.101e-2437.09Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 ... [more]
LAC21_ORYSJ1.438e-2434.50Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC7_ARATH1.878e-2434.88Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=... [more]
LAC17_ARATH2.452e-2435.06Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 S... [more]
PCOA_ECOLX7.135e-2445.16Copper resistance protein A OS=Escherichia coli GN... [more]
LAC10_ORYSJ9.318e-2436.42Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC20_ORYSI1.217e-2337.93Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 ... [more]
LAC6_ORYSJ1.589e-2343.65Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 ... [more]
LAC2_ARATH1.589e-2337.86Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=... [more]
LAC20_ORYSJ1.589e-2337.24Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC2... [more]

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Properties
Property NameValue
Genbank descriptionC32004E07EF DevOvary1 Citrus clementina cDNA clone C32004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876416 ID=FC876416; Name=FC876416; organism=Citrus clementina; type=EST; length=632bp
GGATCTTTCACCTTCTTTCTTACTCTTCATTAATAGTTGGATAGAAAAAA
ATGGGGTTAGGTTTGAGACATGTTGCTGTTGTTGTCACTTGTTGGATACT
AATGTTGTGTTCAGTTTTTGAGACCTCGTACGGTTCAAAAACCAGACACT
ATAAGTGGGAAGTAGAGTACATGTTTTGGTCCCCGGATTGCAAAGAAAGC
ATAGTGATGGGGATCAACGGTCAGTTTCCGGGGCCGACGATCCGAGCCAG
GGCCGGCGACACGATCGCCGTCGAGCTCACTAACAAGCTCTATACTGAAG
GAGTTGTGATTCATTGGCACGGAATCAGACAGCTCGGCACTCCATGGGCT
GATGGCACTGCTTCCATCTCCCAGTGTCCTATTAACCCCGGAGAAACCTA
TCTTTACAGATTCAAAGTTGACAAGGCAGGAACGTACTTTTACCATGGAC
ACTTAGGGATGCAAAGATCAGCAGGTCTGTACGGATCTCTGATTGTGGAC
GTGGCAGACGGAGAGAAAGAGCCATTCCATTATGATGGGGAGTTCAACTT
GTTGTTAAGTGATTGGTGGCACAGAAGTGTCCATGAAGCAGAGGTCGGCC
TCTCCTCAGGCCATTACGTTGGATTGGTGAGC
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