FC876416

Overview
NameFC876416
Unique NameFC876416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10356 contig Ccv1_Contig10356:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: FET3_KLULA (Iron transport multicopper oxidase FET3 OS=Kluyveromyces lactis GN=FET3 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.589e-23
Identity = 58/149 (38.93%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  141 TRHYKWEVEYMFWSPDCK-ESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSV 581
            T  + W   +  ++ D   E  V+  NG+FP P ++ + GD I V LTN        +H+HG+ Q GT   DG   I+QCPI PG+T LY F + D  GTY+YH H G Q   G+ G+L+V+  D    PF YD E  + L++W++ +V
Sbjct:   27 THTFNWTTGWGNYNVDGNFERPVITCNGEFPWPDLKVKRGDRIQVYLTNGFDDRNTSLHFHGLSQNGTNMMDGPEMITQCPIAPGDTMLYNFTIDDNDGTYWYHSHTGGQYQDGMKGTLVVEPED--SLPFDYDEEVVVQLAEWYYDNV 173          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: COPA1_PSESM (Copper resistance protein A OS=Pseudomonas syringae pv. tomato GN=copA PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.589e-23
Identity = 53/120 (44.17%), Postives = 72/120 (60.00%), Query Frame = 3
Query:  207 MGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDW 566
            M ING  PGP +R + GDT+ + + N+L      IHWHGI  +  P  DG   +S   I PG  Y+Y+FKV + GTY+YH H G Q   G+YG L+++    E EPF YD E  ++L+DW
Sbjct:   66 MAINGGLPGPLLRWKEGDTVTLRVRNRL-DAATSIHWHGI--ILPPNMDGVPGLSFAGIEPGGVYVYQFKVQQNGTYWYHSHSGFQEQVGVYGPLVIEAK--EPEPFKYDSEHVVMLTDW 180          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSJ (Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC19 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 55/145 (37.93%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDG-EFNLLLSDWWHRSVHEAEVGLSSGHY 617
            C  + +  +NGQFPGPT+    GDT+ V + NKL   G+ IHWHG+RQ+ + WADG   +++CPI PG  + YRF V  + GT ++H H+   R A + G+ IV   DG K PF     +  +++ +WW   + E +  +  G++
Sbjct:   46 CNTTKIYVVNGQFPGPTVDVTEGDTVVVHVINKL-PFGLTIHWHGVRQMRSCWADGAGFVTECPIPPGNEHTYRFNVTGQVGTLWWHAHVTCLR-ATINGAFIVRPRDG-KYPFPTPAKDVPIIIGEWWELDLIELDRRMMDGNF 187          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSI (Putative laccase-19 OS=Oryza sativa subsp. indica GN=LAC19 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 55/145 (37.93%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDG-EFNLLLSDWWHRSVHEAEVGLSSGHY 617
            C  + +  +NGQFPGPT+    GDT+ V + NKL   G+ IHWHG+RQ+ + WADG   +++CPI PG  + YRF V  + GT ++H H+   R A + G+ IV   DG K PF     +  +++ +WW   + E +  +  G++
Sbjct:   46 CNTTKIYVVNGQFPGPTVDVMEGDTVVVHVINKL-PFGLTIHWHGVRQMRSCWADGAGFVTECPIPPGNEHTYRFNVTGQVGTLWWHAHVTCLR-ATINGAFIVRPRDG-KYPFPTPAKDVPIIIGEWWELDLIELDRRMMDGNF 187          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC14_ARATH (Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 54/168 (32.14%), Postives = 95/168 (56.55%), Query Frame = 3
Query:   78 VVVTCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVD-KAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHR 575
            +V   ++L+   + E    ++  H+ ++++   ++  C  + ++ +NG+FPGPT++A  GD + V + N      + +HWHG RQ+  PW+DG   ++QCPI PGE+Y+YR  +  + GT ++H H    R A ++G+ IV    G   PF     E  L+L +WW +
Sbjct:   18 IVFFLFVLLAFQIAE----AEIHHHTFKIKSKAYTRLCNTNKILTVNGEFPGPTLKAYRGDKLIVNVINNA-NYNITLHWHGARQIRNPWSDGPEYVTQCPIRPGESYVYRIDLKVEEGTIWWHAHSQWAR-ATVHGAFIVYPKRGSSYPFPKPHREIPLILGEWWKK 179          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC13_ARATH (Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 57/134 (42.54%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHY--DGEFNLLLSDWWHRS 578
            C+    + +NGQFPGPT+  R GD++ +   NK     + +HWHGIRQ+  PWADG   I+QCPI PG +Y YRF + D+ GT ++H H    R A +YG+LI+         PF      E  LLL +WW R+
Sbjct:   39 CRVHNSITVNGQFPGPTLEVRNGDSLVITAINKA-RYNISLHWHGIRQMRNPWADGPEYITQCPIQPGGSYTYRFTMEDQEGTLWWHAHSRWLR-ATVYGALIIRPPLSSPHYPFPVIPKREITLLLGEWWDRN 170          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC12_ORYSJ (Laccase-12/13 OS=Oryza sativa subsp. japonica GN=LAC12 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 59/168 (35.12%), Postives = 98/168 (58.33%), Query Frame = 3
Query:   81 VVTCWILMLCSVFETSYGSK--TRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHY-DGEFNLLLSDWWH 572
            V+ C +L+   +  ++ G++  TR Y ++V+    +  C    ++ +NGQ+PGPT+ AR GD + V + N      + IHWHGIRQL + WADG + I+QCPI PG +Y+YRF +  + GT ++H H+   R A ++G +++    G   PF     E  ++  +WW+
Sbjct:    7 VLRCCLLVAALMTLSAMGAEAITRQYLFDVQTTSVTRLCSTKSIVTVNGQYPGPTLFAREGDHVEVTVVNHS-PYNMSIHWHGIRQLLSGWADGPSYITQCPIQPGGSYVYRFTITGQRGTLWWHAHISWLR-ATVHGPMVILPPAGVGYPFPAPHEEVPIMFGEWWN 172          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: FET3_CANGA (Iron transport multicopper oxidase FET3 OS=Candida glabrata GN=FET3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.711e-23
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 3
Query:   99 LMLCSVFETSYGSKTRHYKWEVEYMFWSPD-CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDK-AGTYFYHGHLGMQRSAGLYGSLIVDVADGEKE-PFHYDGEFNLLLSDWWHRSV 581
            L+L + F T+    T  + W   +   + D  KE  V+  NG++P P +R   GD I V LTN        +H+HG+ Q GT   DG   ++QCPI PG+T LY F VD+  GTY+YH H   Q   G+ G  +++  +  K  P+ YD +  L + +W+  +V
Sbjct:    5 LLLSTYFITAVYGATHTFHWTTGWGNRNVDGIKERPVITCNGEYPWPDVRVAKGDRIEVYLTNGFNNTNTSLHFHGMFQRGTNQMDGVPYLTQCPIGPGDTMLYNFTVDENVGTYWYHSHTDGQYEDGMRGLFVIEDGENNKNFPYEYDEDVMLSIGEWYDTTV 168          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC5_ARATH (Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.625e-23
Identity = 59/159 (37.11%), Postives = 87/159 (54.72%), Query Frame = 3
Query:   99 LMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVD-KAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWW 569
            L+  SV E +   K  H+++ ++       C+    + +NG FPGP +    GDT+ V++ N+     + IHWHG+RQ+ T WADG   ++QCPI PG +Y YRF +  + GT ++H H    R A +YGSL+V    G   PF        LLL +WW
Sbjct:   17 LLFSSVAEAN---KAHHHEFIIQATKVKRLCETHNSITVNGMFPGPMLVVNNGDTLVVKVINRA-RYNITIHWHGVRQMRTGWADGPEFVTQCPIRPGSSYTYRFTIQGQEGTLWWHAHSSWLR-ATVYGSLLVFPPAGSSYPFTKPHRNVPLLLGEWW 170          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_PHLRA (Laccase OS=Phlebia radiata GN=LAC PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.625e-23
Identity = 59/138 (42.75%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  180 SPDCKESIVMGINGQFPGPTIRARAGDTIAV----ELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            SPD      +   G FPGP I    GD   +    ELTN    +   IHWHG  Q GT WADG A I+QCPI  G+++LY F+V D+AGT++YH HL  Q   GL G  +V D AD   + +  D +  ++ L+DW+H
Sbjct:   37 SPDGFSRQAVLAEGVFPGPLIAGNKGDNFQINVIDELTNATMLKTTTIHWHGFFQHGTNWADGPAFINQCPIASGDSFLYNFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPADPYLDQYDVDDDSTVITLADWYH 174          
The following BLAST results are available for this feature:
BLAST of FC876416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
FET3_KLULA1.589e-2338.93Iron transport multicopper oxidase FET3 OS=Kluyver... [more]
COPA1_PSESM1.589e-2344.17Copper resistance protein A OS=Pseudomonas syringa... [more]
LAC19_ORYSJ2.076e-2337.93Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC19_ORYSI2.076e-2337.93Putative laccase-19 OS=Oryza sativa subsp. indica ... [more]
LAC14_ARATH2.076e-2332.14Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 S... [more]
LAC13_ARATH2.076e-2342.54Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 S... [more]
LAC12_ORYSJ2.076e-2335.12Laccase-12/13 OS=Oryza sativa subsp. japonica GN=L... [more]
FET3_CANGA2.711e-2335.37Iron transport multicopper oxidase FET3 OS=Candida... [more]
LAC5_ARATH4.625e-2337.11Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=... [more]
LAC1_PHLRA4.625e-2342.75Laccase OS=Phlebia radiata GN=LAC PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32004E07EF DevOvary1 Citrus clementina cDNA clone C32004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876416 ID=FC876416; Name=FC876416; organism=Citrus clementina; type=EST; length=632bp
GGATCTTTCACCTTCTTTCTTACTCTTCATTAATAGTTGGATAGAAAAAA
ATGGGGTTAGGTTTGAGACATGTTGCTGTTGTTGTCACTTGTTGGATACT
AATGTTGTGTTCAGTTTTTGAGACCTCGTACGGTTCAAAAACCAGACACT
ATAAGTGGGAAGTAGAGTACATGTTTTGGTCCCCGGATTGCAAAGAAAGC
ATAGTGATGGGGATCAACGGTCAGTTTCCGGGGCCGACGATCCGAGCCAG
GGCCGGCGACACGATCGCCGTCGAGCTCACTAACAAGCTCTATACTGAAG
GAGTTGTGATTCATTGGCACGGAATCAGACAGCTCGGCACTCCATGGGCT
GATGGCACTGCTTCCATCTCCCAGTGTCCTATTAACCCCGGAGAAACCTA
TCTTTACAGATTCAAAGTTGACAAGGCAGGAACGTACTTTTACCATGGAC
ACTTAGGGATGCAAAGATCAGCAGGTCTGTACGGATCTCTGATTGTGGAC
GTGGCAGACGGAGAGAAAGAGCCATTCCATTATGATGGGGAGTTCAACTT
GTTGTTAAGTGATTGGTGGCACAGAAGTGTCCATGAAGCAGAGGTCGGCC
TCTCCTCAGGCCATTACGTTGGATTGGTGAGC
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