FC876416

Overview
NameFC876416
Unique NameFC876416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10356 contig Ccv1_Contig10356:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_BOTFU (Laccase-1 OS=Botryotinia fuckeliana GN=lcc1 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 4.625e-23
Identity = 62/177 (35.03%), Postives = 84/177 (47.46%), Query Frame = 3
Query:   69 HVAVVVTCWILMLCSVFETSYGSKTRHYKWEVEYMFW--------SPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLL-LSDWWH 572
            + A   +CW           Y + T  Y    +  +W        S D      +  NG  PGP I A  GD + V +TNKL + G  IHWHGIRQL     DG   I+QCPI PG T  Y+F  D  G+ +YH H  +Q   GL+G L+++         +YD +  +L L+DW H
Sbjct:   39 NTATTRSCW---------GQYSASTNSYTTVPKTGYWLVVQNTTLSADGVSRPTLNFNGTIPGPQITADWGDDVIVHVTNKLTSNGTSIHWHGIRQLNNAQYDGVPGITQCPIAPGGTLTYKFHADNYGSSWYHSHFILQYGDGLFGPLVIN----GPATANYDVDLGMLFLNDWNH 202          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC4_TRAVI (Laccase-4 OS=Trametes villosa GN=LCC4 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.889e-23
Identity = 57/138 (41.30%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  180 SPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPWADGTASISQCPINPGETYLYRF-KVDKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            SPD      +  NG FPGP I    GD   + + + L  E ++    IHWHG  Q GT WADG A ++QCPI  G ++LY F   D+AGT++YH HL  Q   GL G ++V D +D   + +  D E  ++ LSDW+H
Sbjct:   38 SPDGFTRAAVLANGVFPGPLITGNKGDNFQINVIDNLSNETMLKSTSIHWHGFFQKGTNWADGAAFVNQCPIATGNSFLYDFTATDQAGTFWYHSHLSTQYCDGLRGPMVVYDPSDPHADLYDVDDETTIITLSDWYH 175          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC4_TRAVE (Laccase-4 OS=Trametes versicolor GN=LCC4 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.889e-23
Identity = 57/138 (41.30%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  180 SPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPWADGTASISQCPINPGETYLYRF-KVDKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            SPD      +  NG FPGP I    GD   + + + L  E ++    IHWHG  Q GT WADG A ++QCPI  G ++LY F   D+AGT++YH HL  Q   GL G ++V D +D   + +  D E  ++ LSDW+H
Sbjct:   38 SPDGFTRAAVLANGVFPGPLITGNKGDNFQINVIDNLSNETMLKSTSIHWHGFFQKGTNWADGAAFVNQCPIATGNSFLYDFTATDQAGTFWYHSHLSTQYCDGLRGPMVVYDPSDPHADLYDVDDETTIITLSDWYH 175          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC14_ORYSJ (Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC14 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.889e-23
Identity = 63/188 (33.51%), Postives = 98/188 (52.13%), Query Frame = 3
Query:   51 MGLGLRHVAVVVTCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINP----GETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHY-DGEFNLLLSDWWHRSVHEAEV 596
            +G G   + ++V+   L+LC   +    +    + + V  +      +  ++  +NGQFPGP + AR GDT+ V + N      + IHWHG+ Q  + WADG A ++QCPI P    G +Y YRF V  + GT ++H H+   R A +YG+L++    G   PF     E  LLL +WW+ S    +V
Sbjct:    5 LGSGSTRILLIVS---LLLCLRQQAVVDAAIVEHTFHVGNLTVERLGQRQVITAVNGQFPGPKVEARNGDTLLVRVVNNS-PYNITIHWHGVLQRLSAWADGPAMVTQCPILPGSGAGSSYTYRFNVTGQEGTLWWHAHVSFLR-ATVYGALLIRPRPGVPYPFPAPHAEHTLLLGEWWNASATLVDV 187          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC9_ARATH (Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.030e-22
Identity = 55/141 (39.01%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  180 SPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYD-GEFNLLLSDWWHRSVHEAEV 596
            +P CKE ++  +NG  PGPTI  R GDT+ V + NK  T  V IHWHG+ QL + W DG   I+QCPI P   + Y+F +  + GT  +H H+ +   A ++G+LI+    G   PF     E  L+   WW   V   E+
Sbjct:   40 TPLCKEQMIPIVNGSLPGPTINVREGDTLVVHVINKS-TYNVTIHWHGVFQLKSVWMDGANMITQCPIQPSNNFTYQFDITGQEGTLLWHAHV-VNLRATIHGALIIRPRSGRPYPFPKPYKEVPLIFQQWWDTDVRLLEL 178          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_ORYSJ (Putative laccase-1 OS=Oryza sativa subsp. japonica GN=LAC1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.030e-22
Identity = 58/163 (35.58%), Postives = 88/163 (53.99%), Query Frame = 3
Query:   99 LMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYR-FKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHRSV 581
            L+L      ++G+KTRHY + +    ++  C E  ++ +NGQFPGPTI AR GD I V + N    + + IHWHG+ Q   PW+DG   I+QCPI PG  + Y+    ++ GT ++H H    R A ++G++++    G    F   D E       WW+  V
Sbjct:   17 LVLALAVNPAHGAKTRHYDFFITETNYTRLCHEKSILTVNGQFPGPTIYARKGDFIIVNVHNN-GNKNITIHWHGVDQPRNPWSDGPEFITQCPIRPGGNFTYQVILFEEEGTLWWHAHSDFDR-ATVHGAIVIHPKRGTTFLFRKLDKEI-----PWWNDDV 172          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC11_ORYSJ (Putative laccase-11 OS=Oryza sativa subsp. japonica GN=LAC11 PE=5 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.030e-22
Identity = 57/130 (43.85%), Postives = 76/130 (58.46%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWH 572
            C    V  +NGQFPGP +  R GDT+ + +TN +    V  HWHGIRQ+ + WADG A I+QCPI  G +Y+YRF V  + GT ++H H    R A LYG L++    G   PF     E  LLL +W++
Sbjct:    8 CVTKSVPTVNGQFPGPKLVVREGDTLVIRVTNNI-NNNVTFHWHGIRQVRSGWADGPAYITQCPIRSGGSYVYRFTVTGQRGTLWWHAHFSWLR-ATLYGPLVILPPRGVAYPFPKPHREVPLLLGEWFN 135          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: FET3_YEAST (Iron transport multicopper oxidase FET3 OS=Saccharomyces cerevisiae GN=FET3 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.346e-22
Identity = 56/148 (37.84%), Postives = 79/148 (53.38%), Query Frame = 3
Query:  135 SKTRHYKWEVEYMFWSPD-CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVD-KAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWH 572
            ++T  + W   + + + D  K   V+  NGQFP P I    GD + + LTN +      +H+HG+ Q GT   DG   ++QCPI PG T LY F VD   GTY+YH H   Q   G+ G  I+     +  P+ YD E +L LS+W+H
Sbjct:   21 AETHTFNWTTGWDYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFII---KDDSFPYDYDEELSLSLSEWYH 165          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC5_TRAVE (Laccase-5 OS=Trametes versicolor GN=LCC5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.757e-22
Identity = 57/138 (41.30%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  180 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            +PD      +   G FPGP I    GD   +     LTN+   +   IHWHGI Q GT WADG A ++QCPI  G ++LY F V D+AGT++YH HL  Q   GL G L+V D  D     +  D +  ++ L+DW+H
Sbjct:   39 TPDGITRAAVLAGGVFPGPLITGNKGDEFQINVIDNLTNETMLKSTTIHWHGIFQAGTNWADGAAFVNQCPIATGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDPDDANASLYDVDDDTTVITLADWYH 176          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC8_ARATH (Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.295e-22
Identity = 54/135 (40.00%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  183 PDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYD-GEFNLLLSDWWHRSV 581
            P CKE I+   NG  PGPTI  R GDT+ V + N   T  V IHWHG+ QL + W DG   I+QCPI PG  + Y+F +  + GT  +H H+ +   A L+G+L++    G   PF     E  ++   WW   V
Sbjct:   41 PLCKEQIIPAANGSLPGPTINVREGDTLVVNVINNS-TYNVTIHWHGVFQLKSVWMDGANMITQCPIQPGYNFTYQFDITGQEGTLLWHAHV-VNLRATLHGALVIRPRSGRPYPFPKPYKEVPIVFQQWWDTDV 173          
The following BLAST results are available for this feature:
BLAST of FC876416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LAC1_BOTFU4.625e-2335.03Laccase-1 OS=Botryotinia fuckeliana GN=lcc1 PE=2 S... [more]
LAC4_TRAVI7.889e-2341.30Laccase-4 OS=Trametes villosa GN=LCC4 PE=3 SV=1[more]
LAC4_TRAVE7.889e-2341.30Laccase-4 OS=Trametes versicolor GN=LCC4 PE=3 SV=1[more]
LAC14_ORYSJ7.889e-2333.51Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC9_ARATH1.030e-2239.01Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=... [more]
LAC1_ORYSJ1.030e-2235.58Putative laccase-1 OS=Oryza sativa subsp. japonica... [more]
LAC11_ORYSJ1.030e-2243.85Putative laccase-11 OS=Oryza sativa subsp. japonic... [more]
FET3_YEAST1.346e-2237.84Iron transport multicopper oxidase FET3 OS=Sacchar... [more]
LAC5_TRAVE1.757e-2241.30Laccase-5 OS=Trametes versicolor GN=LCC5 PE=2 SV=1[more]
LAC8_ARATH2.295e-2240.00Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC32004E07EF DevOvary1 Citrus clementina cDNA clone C32004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876416 ID=FC876416; Name=FC876416; organism=Citrus clementina; type=EST; length=632bp
GGATCTTTCACCTTCTTTCTTACTCTTCATTAATAGTTGGATAGAAAAAA
ATGGGGTTAGGTTTGAGACATGTTGCTGTTGTTGTCACTTGTTGGATACT
AATGTTGTGTTCAGTTTTTGAGACCTCGTACGGTTCAAAAACCAGACACT
ATAAGTGGGAAGTAGAGTACATGTTTTGGTCCCCGGATTGCAAAGAAAGC
ATAGTGATGGGGATCAACGGTCAGTTTCCGGGGCCGACGATCCGAGCCAG
GGCCGGCGACACGATCGCCGTCGAGCTCACTAACAAGCTCTATACTGAAG
GAGTTGTGATTCATTGGCACGGAATCAGACAGCTCGGCACTCCATGGGCT
GATGGCACTGCTTCCATCTCCCAGTGTCCTATTAACCCCGGAGAAACCTA
TCTTTACAGATTCAAAGTTGACAAGGCAGGAACGTACTTTTACCATGGAC
ACTTAGGGATGCAAAGATCAGCAGGTCTGTACGGATCTCTGATTGTGGAC
GTGGCAGACGGAGAGAAAGAGCCATTCCATTATGATGGGGAGTTCAACTT
GTTGTTAAGTGATTGGTGGCACAGAAGTGTCCATGAAGCAGAGGTCGGCC
TCTCCTCAGGCCATTACGTTGGATTGGTGAGC
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