FC876416

Overview
NameFC876416
Unique NameFC876416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10356 contig Ccv1_Contig10356:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_PYCCI (Laccase OS=Pycnoporus cinnabarinus GN=LCC3-1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.664e-20
Identity = 54/138 (39.13%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  180 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            SPD      + +NG  P P I  + GD   +     LTN    +   IHWHG  Q GT WADG + ++QCPI  G ++LY F+V D+AGT++YH HL  Q   GL G  +V D  D +   +  D +  ++ L+DW+H
Sbjct:   37 SPDGFSREAVVVNGITPAPLIAGQKGDRFQLNVIDNLTNHTMLKTTSIHWHGFFQHGTNWADGVSFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPQASLYDIDNDDTVITLADWYH 174          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.664e-20
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   63 LRHVAVVVTCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFK-VDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEAEVGLSSGHYVG 623
            +R V ++  C  L   +           H+ W V Y   SP      V+ INGQFPGP I + + + + + + N L  E  ++ W+GI+     W DGT   + CPI PG  Y Y F+  D+ G+YFY+   GM R+AG YG L V+       P+   + ++ +L+ DW+ +S  + +  L  G  +G
Sbjct:    1 MRGVKLLAACLYLAAAATVVVHAEDPYFHHVWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNVIINVFNNL-DEPFLLTWNGIQHRKNCWQDGTPG-TMCPIMPGTNYTYHFQPKDQIGSYFYYPTTGMHRAAGGYGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTQLKKFLDGGRTIG 187          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC5_ORYSJ (Putative laccase-5 OS=Oryza sativa subsp. japonica GN=LAC5 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.250e-20
Identity = 53/130 (40.77%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  141 TRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF 527
            TRHY + V+    +  C    +  +NGQFPGP +  R GD + V++ N +    V  HWHGI QL   WADG + I+QCPI  G +Y+Y F V  + GT ++H H    R   LYG L++    GE  PF
Sbjct:   37 TRHYTFNVQMTNVTRLCVTKSIPTVNGQFPGPKLVVREGDRLVVKVHNHM-NYNVSFHWHGILQLRNGWADGPSYITQCPIQGGGSYVYDFTVTGQRGTLWWHAHFSWLR-VHLYGPLVILPKRGEGFPF 164          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC2_AGABI (Laccase-2 OS=Agaricus bisporus GN=lcc2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.163e-20
Identity = 53/151 (35.10%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  141 TRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTE----GVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            T+ + +++     +PD  E   + ING+FPG  ++   GD++ + + NKL +      V IHWHG  Q  T   DG A ++QCP  P  T+ Y F V D++GT++YH HL  Q   GL G+ +V D  D     +  D E  ++ L++W+H
Sbjct:   21 TKTFNFDLVNTRLAPDGFERDTVVINGEFPGTLVQVNKGDSVRIPVNNKLTSSTMRRSVSIHWHGFFQARTSGQDGPAFVNQCPQPPNTTFTYEFSVADESGTFWYHSHLSTQYCDGLRGAFVVYDPEDPLGHLYDVDDETTVITLAEWYH 171          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: FET5_YEAST (Iron transport multicopper oxidase FET5 OS=Saccharomyces cerevisiae GN=FET5 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.163e-20
Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  135 SKTRHYKWEVEYMFWSPD-CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVV-IHWHGIRQ---LGTPWA-DGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRS 578
            +KT    +   ++  +PD   E  ++G NG++P P I    GD + + LTN         +H+HG+ Q   LG     DG + ++QCPI PG+TYLY F V ++ GT++YH H+G Q   G+ G+ I+      +EPF YD E  + LSD +H +
Sbjct:   18 AKTHKLNYTASWVTANPDGLHEKRMIGFNGEWPLPDIHVEKGDRVELYLTNGFQDNTATSLHFHGLFQNTSLGNQLQMDGPSMVTQCPIVPGQTYLYNFTVPEQVGTFWYHAHMGAQYGDGMRGAFII---HDPEEPFEYDHERVITLSDHYHEN 169          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_CRYPA (Laccase OS=Cryphonectria parasitica GN=LAC-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.392e-19
Identity = 54/133 (40.60%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  204 VMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINP-GETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFN-LLLSDWWHRSVHEAEV 596
            VM +NG   GP I A+ GDTI+V +TN L   G  IHWHGIRQL T   DG   I++CPI P G +  Y F   + GT +YH H   Q   G+ G++ +D          YD +   L+LSD+++++  E  V
Sbjct:   90 VMLVNGNILGPVIHAQWGDTISVTVTNNLKYNGTTIHWHGIRQLNTNLQDGVNGITECPIPPNGGSKTYTFIAHQYGTSWYHSHFSAQYGNGIVGAIQID----GPASLPYDIDLGPLVLSDYYYKTADELVV 218          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC15_ORYSJ (Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC15 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.819e-19
Identity = 50/146 (34.25%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKE-PF-HYDGEFNLLLSDWWHRSVHEAEVGLSSGHY 617
            CKE     +NGQ PGPTI    GD++ V + NK     + IHWHG+ QL   W DG   I+Q PI P   + YRF V  + GT ++H H    R   ++G+LI+    G    PF     E  +++ +WW + + + +  +++G++
Sbjct:   56 CKEMAFTVVNGQLPGPTIEVTEGDSVTVHVVNKS-PYNLTIHWHGVYQLLNCWNDGVPMITQRPIQPNHNFTYRFNVAGQEGTLWWHAHDAFLRGT-VHGALIIRPRHGAASYPFPRPHREVPIIIGEWWEKDLPQVDRNMTNGYF 199          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC2_PODAN (Laccase-2 OS=Podospora anserina GN=LAC2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.179e-18
Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  204 VMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINP-GETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYD-GEFNLLLSDWWHR 575
            VM +NG   GPTI A  GD I V + N L T G  IHWHG+ Q GT   DG   +++CPI P G + +YRF+  + GT +YH H   Q   G+ G+++V+       P+  D G F   ++D++H+
Sbjct:  102 VMLVNGDIFGPTITANWGDWIQVNVINNLRTNGTSIHWHGLHQKGTNMHDGANGVTECPIPPKGGSRIYRFRAQQYGTSWYHSHFSAQYGNGVVGTIVVN--GPASVPYDIDLGVFP--ITDYYHK 223          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC2_PLEOS (Laccase-2 OS=Pleurotus ostreatus GN=POX2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.479e-18
Identity = 46/122 (37.70%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  228 PGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            PG  ++   GD   + + N+L    ++    IHWHG  Q G+ WADG A ++QCP+  G+++LY F V D+AGT++YH HL  Q   GL G  +V D +D     +  D    ++ L DW+H
Sbjct:   66 PGVLVQGNKGDNFQLNVVNQLSDTTMLKTTSIHWHGFFQAGSSWADGPAFVTQCPVASGDSFLYNFNVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPSDPHLSLYDIDNADTVITLEDWYH 187          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.979e-18
Identity = 52/161 (32.30%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  150 YKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEAEVGLSSGHYVGL 626
            Y + V Y+  SP      V+ +NGQFPGP + A     + V + N L  E +++ W GI+     W DG    + CPI P   + Y+F+V D+ G++FY   L  QR++G +G ++++  D    PF   DGE   ++ DW+ +        L SG  +G+
Sbjct:   31 YDFRVSYLTASPLGVPQQVIAVNGQFPGPLLNATTNYNVVVNVFNHL-DEPLLLTWPGIQMRRNSWQDGVLG-TNCPIPPRWNFTYQFQVKDQIGSFFYSPSLNFQRASGGFGPIVINNRDIIPIPFPQPDGELIFIIGDWYTQDHKALRRALDSGKELGM 189          
The following BLAST results are available for this feature:
BLAST of FC876416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LAC1_PYCCI3.664e-2039.13Laccase OS=Pycnoporus cinnabarinus GN=LCC3-1 PE=1 ... [more]
ASOL_BRANA3.664e-2031.75L-ascorbate oxidase homolog OS=Brassica napus GN=B... [more]
LAC5_ORYSJ6.250e-2040.77Putative laccase-5 OS=Oryza sativa subsp. japonica... [more]
LAC2_AGABI8.163e-2035.10Laccase-2 OS=Agaricus bisporus GN=lcc2 PE=1 SV=1[more]
FET5_YEAST8.163e-2036.13Iron transport multicopper oxidase FET5 OS=Sacchar... [more]
LAC1_CRYPA1.392e-1940.60Laccase OS=Cryphonectria parasitica GN=LAC-1 PE=3 ... [more]
LAC15_ORYSJ1.819e-1934.25Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC2_PODAN1.179e-1839.68Laccase-2 OS=Podospora anserina GN=LAC2 PE=2 SV=1[more]
LAC2_PLEOS4.479e-1837.70Laccase-2 OS=Pleurotus ostreatus GN=POX2 PE=1 SV=1[more]
SKS1_ARATH9.979e-1832.30Monocopper oxidase-like protein SKS1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC32004E07EF DevOvary1 Citrus clementina cDNA clone C32004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876416 ID=FC876416; Name=FC876416; organism=Citrus clementina; type=EST; length=632bp
GGATCTTTCACCTTCTTTCTTACTCTTCATTAATAGTTGGATAGAAAAAA
ATGGGGTTAGGTTTGAGACATGTTGCTGTTGTTGTCACTTGTTGGATACT
AATGTTGTGTTCAGTTTTTGAGACCTCGTACGGTTCAAAAACCAGACACT
ATAAGTGGGAAGTAGAGTACATGTTTTGGTCCCCGGATTGCAAAGAAAGC
ATAGTGATGGGGATCAACGGTCAGTTTCCGGGGCCGACGATCCGAGCCAG
GGCCGGCGACACGATCGCCGTCGAGCTCACTAACAAGCTCTATACTGAAG
GAGTTGTGATTCATTGGCACGGAATCAGACAGCTCGGCACTCCATGGGCT
GATGGCACTGCTTCCATCTCCCAGTGTCCTATTAACCCCGGAGAAACCTA
TCTTTACAGATTCAAAGTTGACAAGGCAGGAACGTACTTTTACCATGGAC
ACTTAGGGATGCAAAGATCAGCAGGTCTGTACGGATCTCTGATTGTGGAC
GTGGCAGACGGAGAGAAAGAGCCATTCCATTATGATGGGGAGTTCAACTT
GTTGTTAAGTGATTGGTGGCACAGAAGTGTCCATGAAGCAGAGGTCGGCC
TCTCCTCAGGCCATTACGTTGGATTGGTGAGC
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