FC876420

Overview
NameFC876420
Unique NameFC876420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1784..2433. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.152e-72
Identity = 123/201 (61.19%), Postives = 154/201 (76.62%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNRQLSV+HPI++LL PHFR TM IN  ARQ LVNA G++ES+    K++ME S+V Y K W F  +ALP DL+ RG+AVED S+PHG++L IEDYP+A DGL++W AIK WVTDY + YY     +  D ELQAWW E+R VGHGDKK+EPWWP ++TP++LI+  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R
Sbjct:  536 ATNRQLSVLHPIHKLLYPHFRDTMNINASARQLLVNAGGVLESTVFQSKFAMEMSAVVY-KDWVFPDQALPADLVKRGVAVEDSSSPHGVRLLIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSR 735          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 5.717e-72
Identity = 122/210 (58.10%), Postives = 153/210 (72.86%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATE-DP 629
            + +RQLS MHPI++LLDPH RYT+EIN LARQ+L++ADG+IE  F+ G Y ME S+ AY   WRFD E LP DLI RG+A+ D + PHGLKL IEDYP+ANDGL LW AI+ WV  YV  YYP+ +L+++D ELQ+W++E   VGH D +   WWP L T  DL+ I+TT++W+ S  HAA+NFGQY YGGY PNRP   R  I  E DP
Sbjct:  592 AAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLISADGVIEGGFTAGAYGMEMSAAAYKSSWRFDMEGLPADLIRRGMAIPDATQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSESINVGHADLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDP 801          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 9.752e-72
Identity = 119/201 (59.20%), Postives = 157/201 (78.11%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNRQLSV+HP+Y+LL PH+R TM IN LAR++LVNADGIIE +F  G+Y++E S+V Y K W    +ALP DL+ RG+AV+DPSAPHG+KL IEDYP+A+DGL++WDAIK WV +YV  YY    +++ D ELQAWW E+  VGHGD K +PWWP +++ ++L+E+ TT++W+ S  HAAVNFGQY YGG   NRPT +R
Sbjct:  421 ATNRQLSVVHPVYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWGRYALELSAVIY-KDWSLHDQALPNDLVKRGVAVKDPSAPHGVKLVIEDYPYASDGLEIWDAIKSWVVEYVAFYYKSDEVLQQDSELQAWWKELVQVGHGDLKDKPWWPKMQSRENLVEVSTTLIWIASALHAAVNFGQYPYGGLILNRPTISR 620          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.274e-71
Identity = 119/201 (59.20%), Postives = 154/201 (76.62%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            ++NRQLSV+HPI++LL PHFR TM IN LAR  L+N+DG++E +  P +Y+ME SS  Y K W F  +ALPKDL+ RG+AVEDP++ +G+KL IEDYPFA DGL++W AIK WVT+Y   YY +   V++D E+Q+WWTE+RT GHGDK+HE WWP ++T  DLIE  T I+W+ S  HAAVNFGQY Y G+ PNRPT +R
Sbjct:  556 ASNRQLSVVHPIHKLLHPHFRDTMNINALARHVLINSDGVLERTVFPSRYAMEMSSSIY-KNWVFTEQALPKDLLKRGVAVEDPNSDNGVKLLIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTELRTKGHGDKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSR 755          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.321e-71
Identity = 121/201 (60.20%), Postives = 150/201 (74.63%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNR LSV+HPIY+LL PH+R TM IN LARQ+L+NA G+IE SF PG++++E SS  Y K W F  +ALP DLI RG+AVEDPS+P+GL+L +EDYP+A DGL++WD I+ WV DYV+ YYP    V+ D ELQAWW E    GHGD K +PWWP L TP+DLI   + I+W+ S  HAAVNFGQY YGG+  NRPT  R
Sbjct:  536 ATNRHLSVLHPIYKLLLPHYRDTMNINALARQSLINAGGVIERSFLPGEFAVEMSSAVY-KSWVFTDQALPADLIKRGMAVEDPSSPYGLRLVVEDYPYAVDGLEIWDTIQTWVKDYVSLYYPTNDAVKKDTELQAWWKEAVEKGHGDLKDKPWWPKLNTPQDLIHTCSIIIWIASALHAAVNFGQYPYGGFILNRPTITR 735          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 6.321e-71
Identity = 121/201 (60.20%), Postives = 145/201 (72.14%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            + +R +S MHPI++LL PH RYT+EIN LARQ+L+NADG+IES F+PG  S E S+  Y   WRFD E LP DLI RG+AVED + PHG++L IEDYP+ANDGL LW AI+ WV  YV  YYPD   V+ D ELQ W+ E   VGHGD +H PWWP L TP DL  I+TT+VW+ S  HAA+NFGQY  GGY PNRP   R
Sbjct:  587 AAHRHMSAMHPIFKLLHPHMRYTLEINALARQSLINADGVIESCFTPGPVSGEISAAYYRNHWRFDLEGLPSDLIRRGVAVEDATQPHGVRLLIEDYPYANDGLLLWSAIRSWVESYVQLYYPDAGTVQCDLELQGWYHESIHVGHGDLRHAPWWPPLSTPVDLASILTTLVWLASAQHAALNFGQYPLGGYVPNRPPLIR 787          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.839e-70
Identity = 121/201 (60.20%), Postives = 154/201 (76.62%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNRQLSV+HPIY+LL PH+R TM IN LAR+ALVNADGIIE +F  G+YSME S+V Y K W F  +ALP DL+ RG+AV+DPSAPHG++L IEDYP+A+DGL++WDAIK WV +YV+ YY     ++ D ELQAWW E+  VGHGD K +PWW  ++T ++L+E    ++W+ S  HAAVNFGQY YGG   NRPT +R
Sbjct:  527 ATNRQLSVVHPIYKLLFPHYRDTMNINSLARKALVNADGIIEKTFLWGRYSMEMSAVIY-KDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVQEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTISR 726          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.192e-69
Identity = 122/201 (60.70%), Postives = 150/201 (74.63%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNR LS +HPIY+LL PH+R TM IN LARQ+L+NADGIIE SF P K+S+E SS  Y K W F  +ALP DLI RG+A++DPSAPHGL+L IEDYP+A DGL++W AIK WV +YV+ YY     V+ D ELQ WW E    GHGD K +PWWP L+T ++L+EI T I+W  S  HAAVNFGQY YGG+  NRPT++R
Sbjct:  541 ATNRHLSALHPIYKLLTPHYRDTMNINALARQSLINADGIIEKSFLPSKHSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSAPHGLRLLIEDYPYAVDGLEIWAAIKTWVQEYVSLYYARDDDVKPDSELQQWWKEAVEKGHGDLKDKPWWPKLQTIEELVEICTIIIWTASALHAAVNFGQYPYGGFILNRPTSSR 740          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 4.530e-69
Identity = 120/210 (57.14%), Postives = 147/210 (70.00%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATE-DP 629
            + +RQ+S MHPI++LL PH RYT++IN LARQ L+N DG+IES F+PG   ME S+ AY + WR D E LP DLI RG+AVEDPS PHGL+L IEDYP+A DGL LW AI +W   YV  YYP    V++D ELQ+W+ E    GH DK+  PWWP L TP DL  ++TT+VW+ S  HAA+NFGQY  GGY PNRP   R  +  E DP
Sbjct:  573 AAHRQMSAMHPIFKLLKPHMRYTLKINALARQILINGDGVIESGFTPGNVCMEMSAFAYRELWRLDQEGLPADLIRRGMAVEDPSQPHGLRLLIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWYAEAVQSGHADKRGAPWWPRLSTPGDLASLLTTLVWLCSAQHAALNFGQYPLGGYIPNRPPLMRRLVPAEGDP 782          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 4.530e-69
Identity = 116/201 (57.71%), Postives = 148/201 (73.63%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNRQLSV+HP+++LL+PHFR TM IN LARQ L+N  GI E +  P KY+ME SS  Y   W F  +ALP +L  RG+AVEDP APHGL+L I+DYP+A DGL++W AI+ WV DY+  +Y  +  +++D ELQAWW E+R  GHGDKK EPWWP ++T ++L+E  T I+WV S  HAAVNFGQY   GY PNRPT +R
Sbjct:  533 ATNRQLSVLHPVFKLLEPHFRDTMNINALARQILINGGGIFEITVFPSKYAMEMSSFIYKNHWTFPDQALPAELKKRGMAVEDPEAPHGLRLRIKDYPYAVDGLEVWYAIESWVRDYIFLFYKIEEDIQTDTELQAWWKEVREEGHGDKKSEPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPVAGYLPNRPTISR 733          
The following BLAST results are available for this feature:
BLAST of FC876420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX1_SOLTU1.152e-7261.19Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX3_ARATH5.717e-7258.10Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOXB_PHAVU9.752e-7259.20Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOX5_ARATH1.274e-7159.20Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOXA_PHAVU6.321e-7160.20Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX6_ORYSJ6.321e-7160.20Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX4_SOYBN1.839e-7060.20Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX2_SOYBN1.192e-6960.70Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX5_ORYSJ4.530e-6957.14Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX1_ARATH4.530e-6957.71Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32004E11EF DevOvary1 Citrus clementina cDNA clone C32004E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876420 ID=FC876420; Name=FC876420; organism=Citrus clementina; type=EST; length=650bp
ATAGCACCAATCGGCAACTCAGCGTGATGCATCCAATCTATAGATTGTTG
GATCCTCATTTTCGATACACAATGGAGATCAATGGTTTGGCTCGACAAGC
TCTTGTTAATGCTGATGGAATCATTGAAAGCTCATTCTCACCTGGAAAGT
ACTCTATGGAATTTAGCTCTGTTGCCTATGACAAGCAATGGCGCTTTGAC
CATGAAGCACTCCCCAAAGACCTAATTAGCCGGGGATTGGCTGTTGAAGA
TCCAAGTGCTCCACATGGCTTGAAGCTAACAATTGAAGACTATCCTTTTG
CCAATGATGGCCTTGATCTCTGGGATGCCATAAAACAATGGGTTACCGAT
TATGTTAATCACTACTACCCTGATAAAAGCCTTGTAGAATCTGATGAAGA
GCTCCAAGCTTGGTGGACTGAAATTCGAACTGTGGGACACGGTGACAAGA
AACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAGGATTTAATTGAA
ATCATCACAACTATTGTTTGGGTAACATCTGGTCACCACGCAGCTGTTAA
CTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATAGGCCAACCACTG
CAAGATGCAACATTGCCACTGAAGATCCATCTGATGAAACATGGAAATTC
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