FC876420

Overview
NameFC876420
Unique NameFC876420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1784..2433. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.009e-68
Identity = 113/201 (56.22%), Postives = 151/201 (75.12%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNRQLSV+HP+++LL PH+R TM IN LARQ L+NADGI E +  PGKY++E SSV Y K W+F  +ALP DL+ RG+AV DP++P+ ++L I+DYP+A DGL +W AI++WV +Y+  YYP+  ++  DEELQAWW E+R VGHGD K + WWP + T ++L    T I+W+ S  HAAVNFGQY Y G+ PNRPT +R
Sbjct:  542 ATNRQLSVVHPVHKLLSPHYRDTMNINALARQTLINADGIFEKTVFPGKYALEMSSVVY-KNWKFTEQALPVDLVKRGVAVPDPTSPYNVRLLIKDYPYAVDGLVIWWAIERWVGEYLAIYYPNDGVLRGDEELQAWWKEVREVGHGDLKDQDWWPKMDTVQELTRACTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSR 741          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.009e-68
Identity = 119/201 (59.20%), Postives = 147/201 (73.13%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNR LS +HPIY+LL PH+R TM IN LAR +LVN  GIIE +F  G+YSME SS  Y K W F  +ALP DLI RG+A+EDPS+P G+KL +EDYP+A DGL++W  IK WV DYV+ YY     +  D ELQAWW E+  VGHGDKK+EPWWP ++T +DLIE+ + ++W  S  HAAVNFGQY YGG   NRPT +R
Sbjct:  536 ATNRHLSCLHPIYKLLYPHYRDTMNINSLARLSLVNDGGIIEKTFLWGRYSMEMSSKVY-KNWVFTEQALPADLIKRGMAIEDPSSPCGVKLVVEDYPYAVDGLEIWAIIKTWVQDYVSLYYTSDEKLRQDSELQAWWKELVEVGHGDKKNEPWWPKMQTREDLIEVCSIVIWTASALHAAVNFGQYSYGGLILNRPTLSR 735          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.541e-68
Identity = 119/201 (59.20%), Postives = 148/201 (73.63%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNR LSV+HPIY+LL PH+R TM INGLAR +LVN  G+IE +F  G+YS+E S+V Y K W F  +ALP DLI RG+A+EDPS PHG++L IEDYP+A DGL++WDAIK WV +YV  YY     +  D ELQA W E+  VGHGDKK+EPWWP ++T ++L+E    I+W  S  HAAVNFGQY YGG   NRPT +R
Sbjct:  532 ATNRHLSVVHPIYKLLHPHYRDTMNINGLARLSLVNDGGVIEQTFLWGRYSVEMSAVVY-KDWVFTDQALPADLIKRGMAIEDPSCPHGIRLVIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEPWWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSR 731          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 1.903e-67
Identity = 117/201 (58.21%), Postives = 148/201 (73.63%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T+R LSV+HPIY+LL PH+R  M IN LARQ+L+NA+GIIE++F P KYS+E SS  Y K W F  +ALP DLI RG+A++DPS PHG++L IEDYP+A DGL++W AIK WV +YV  YY     V++D ELQ WW E    GHGD K +PWWP L+T +DL+E+   I+W+ S  HAAVNFGQY YGG   NRPT +R
Sbjct:  513 ATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASR 712          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 9.446e-67
Identity = 112/201 (55.72%), Postives = 145/201 (72.14%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNRQLSV HP+Y+LL PH+R TM IN LARQ L+N  GI E +  PGK+++  SS  Y K W F  + LP DLI RG+A++DPS+P  +KL I+DYP+A DGL +W AI+QWVT+Y   YYP+  +++ D ELQAWW E+R VGHGD K   WWP +++  +L +  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R
Sbjct:  532 ATNRQLSVTHPVYKLLQPHYRDTMTINALARQTLINGGGIFEQTVFPGKHALAMSSAVY-KNWNFTEQGLPDDLIKRGIAIKDPSSPSKVKLLIKDYPYATDGLAIWQAIEQWVTEYCAIYYPNDGVLQGDVELQAWWKEVREVGHGDLKDADWWPKMQSLPELTKACTTIIWIASALHAAVNFGQYPYAGYLPNRPTISR 731          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 7.996e-66
Identity = 116/201 (57.71%), Postives = 148/201 (73.63%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNR LSV+HPI++LL PH+R TM IN LAR  LVNA+GIIES+F  G Y+ME S+V Y K W F  + LP DLI RG+AV+DPS+PHG++L IEDYP+A+DGL++W AIK WV +YVN YY   + +  D ELQA+W E+  VGHGD K   WW  ++  K+LIE  + ++W+ S  HAAVNFGQY YGGY  NRPT +R
Sbjct:  540 ATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGNYAMEMSAVVY-KDWVFPDQGLPNDLIKRGVAVKDPSSPHGVRLLIEDYPYASDGLEIWAAIKSWVEEYVNFYYKSDAAIAQDAELQAFWKELVEVGHGDLKSATWWFKMQNRKELIEACSILIWIASALHAAVNFGQYPYGGYILNRPTKSR 739          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.364e-65
Identity = 120/212 (56.60%), Postives = 148/212 (69.81%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDE 638
            +TNR LSV+HPI++LL PHFR TM IN LAR+ L   DG  E+S  P KYSME S+ AY K W F  +ALP DL+ RG+AVED S+PHG++L I DYP+A DGL++W AIK WVT+Y   YY     VE D ELQAWW E+R  GHGDKK E WWP L+T ++L +  T I+W+ S  HAA++FG Y Y GY PNRPT + CN+  E  S E
Sbjct:  535 ATNRHLSVLHPIHKLLHPHFRNTMNINALARETLTY-DGGFETSLFPAKYSMEMSAAAY-KDWVFPEQALPADLLKRGVAVEDLSSPHGIRLLILDYPYAVDGLEIWAAIKSWVTEYCKFYYKSDETVEKDTELQAWWKELREEGHGDKKDEAWWPKLQTRQELRDCCTIIIWIASALHAALHFGLYSYAGYLPNRPTLS-CNLMPEPGSVE 743          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 3.969e-65
Identity = 109/201 (54.23%), Postives = 148/201 (73.63%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            STNR LSV HP+++LL PH+R TM IN LARQ L+NA GI E +  PGK+++  S+V Y K W+F  + LP DLI RG+AVEDPS+P+ ++L + DYP+A DGL +W AI+Q+V++Y+  YYP+  +++ D E+QAWW E R VGHGD K  PWWP +++  +L +  TTI+W+ S  HAAVNFGQY Y G+ PNRPT +R
Sbjct:  531 STNRHLSVTHPVHKLLSPHYRDTMTINALARQTLINAGGIFEMTVFPGKFALGMSAVVY-KDWKFTEQGLPDDLIKRGMAVEDPSSPYKVRLLVSDYPYAADGLAIWHAIEQYVSEYLAIYYPNDGVLQGDTEVQAWWKETREVGHGDLKDAPWWPKMQSVPELAKACTTIIWIGSALHAAVNFGQYPYAGFLPNRPTVSR 730          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.183e-65
Identity = 111/201 (55.22%), Postives = 144/201 (71.64%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNRQLSV HP+++LL PH+R TM IN LARQ L+NA GI E +  PGKY++  SS+ Y K W F  + LP DLI RG+AVED ++P+ ++L I+DYP+A DGL++W AI+QWV +Y+  YY D  ++  D ELQAWW E+R VGHGD K   WWP +    +L +  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R
Sbjct:  535 ATNRQLSVTHPVHKLLSPHYRDTMTINALARQTLINAGGIFEMTVFPGKYALWMSSMVY-KNWNFTEQGLPADLIKRGVAVEDATSPYKVRLLIKDYPYAADGLEIWHAIEQWVGEYLAIYYTDDGVLRGDAELQAWWAEVREVGHGDLKGAAWWPRMDAVSELRDACTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSR 734          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 6.769e-65
Identity = 110/201 (54.73%), Postives = 146/201 (72.64%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNRQLSV HP+++LL PH+R TM IN LARQ L+N  GI E +  P K+++  SS  Y K W F  +ALP DL+ RG+AV DP++P+ ++L IEDYP+ANDGL +W AI+QW T+Y+  YYP+  +++ D ELQAWW E+R VGHGD K   WWP +KT  +L++   TI+W+ S  HAAVNFGQY Y GY PNRP+ +R
Sbjct:  539 ATNRQLSVAHPVHKLLLPHYRDTMTINALARQTLINGGGIFEMTVFPRKHALAMSSAFY-KDWSFADQALPDDLVKRGVAVPDPASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREVGHGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPYAGYLPNRPSVSR 738          
The following BLAST results are available for this feature:
BLAST of FC876420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX4_ORYSJ5.009e-6856.22Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX3_PEA5.009e-6859.20Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX3_SOYBN6.541e-6859.20Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_SOYBN1.903e-6758.21Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX1_ORYSJ9.446e-6755.72Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_LENCU7.996e-6657.71Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOXB_SOLLC1.364e-6556.60Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_HORVU3.969e-6554.23Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX3_ORYSJ5.183e-6555.22Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX2_ORYSJ6.769e-6554.73Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32004E11EF DevOvary1 Citrus clementina cDNA clone C32004E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876420 ID=FC876420; Name=FC876420; organism=Citrus clementina; type=EST; length=650bp
ATAGCACCAATCGGCAACTCAGCGTGATGCATCCAATCTATAGATTGTTG
GATCCTCATTTTCGATACACAATGGAGATCAATGGTTTGGCTCGACAAGC
TCTTGTTAATGCTGATGGAATCATTGAAAGCTCATTCTCACCTGGAAAGT
ACTCTATGGAATTTAGCTCTGTTGCCTATGACAAGCAATGGCGCTTTGAC
CATGAAGCACTCCCCAAAGACCTAATTAGCCGGGGATTGGCTGTTGAAGA
TCCAAGTGCTCCACATGGCTTGAAGCTAACAATTGAAGACTATCCTTTTG
CCAATGATGGCCTTGATCTCTGGGATGCCATAAAACAATGGGTTACCGAT
TATGTTAATCACTACTACCCTGATAAAAGCCTTGTAGAATCTGATGAAGA
GCTCCAAGCTTGGTGGACTGAAATTCGAACTGTGGGACACGGTGACAAGA
AACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAGGATTTAATTGAA
ATCATCACAACTATTGTTTGGGTAACATCTGGTCACCACGCAGCTGTTAA
CTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATAGGCCAACCACTG
CAAGATGCAACATTGCCACTGAAGATCCATCTGATGAAACATGGAAATTC
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