FC876420

Overview
NameFC876420
Unique NameFC876420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1784..2433. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.970e-64
Identity = 116/202 (57.43%), Postives = 148/202 (73.27%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTM-EINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +TNRQLSV+HPI +LL PH+R TM  IN LAR +L+NA+G+IE SF P KY++E SS  Y K W F  +ALP DLI R +AV+D S+P+GL+L IEDYP+A DGL++W AIK WV DYV+ YY   + +++D ELQ WW E+   GHGD K +PWWP L+T  +L+E+ T I+W  S  HAAVNFGQY YGG   NRPT +R
Sbjct:  538 ATNRQLSVVHPINKLLAPHYRDTMMNINALARDSLINANGLIERSFLPSKYAVEMSSAVY-KYWVFTDQALPNDLIKRNMAVKDSSSPYGLRLLIEDYPYAVDGLEIWTAIKTWVQDYVSLYYATDNDIKNDSELQHWWKEVVEKGHGDLKDKPWWPKLQTFDELVEVCTIIIWTASALHAAVNFGQYPYGGLILNRPTLSR 738          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOXE3_HUMAN (Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=ALOXE3 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 69/201 (34.33%), Postives = 115/201 (57.21%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T RQL + HPIY+LL PH RYT+++N +AR  L+N +G+++   S G+  + +        + + +  LP  L +RG+            L I +Y + +DGL +W AI+ +V++ V +YYP  + V+ D ELQAW  EI       ++   +   L TP ++++ +T I++  S  HAAVN GQ+ +G + PN P++ R
Sbjct:  422 ATLRQLPLCHPIYKLLLPHTRYTLQVNTIARATLLNPEGLVDQVTSIGRQGLIYLMSTGLAHFTYTNFCLPDSLRARGV------------LAIPNYHYRDDGLKIWAAIESFVSEIVGYYYPSDASVQQDSELQAWTGEIFAQAFLGRESSGFPSRLCTPGEMVKFLTAIIFNCSAQHAAVNSGQHDFGAWMPNAPSSMR 610          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 69/201 (34.33%), Postives = 116/201 (57.71%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T RQL + HP+Y+LL PH RYT+++N +AR  L+N DG+++   S G+  + +        + +    LP  + +RG+            LTI +Y + +DGL +W AI+++V++ V++YYP  + V+ D ELQAW  EI       ++   +   L TP +L++ +T I++  S  HAA N GQ+ +G + PN P++ R
Sbjct:  422 ATLRQLPLCHPVYKLLLPHTRYTLQVNTIARATLLNPDGLVDKVTSIGRQGLIYLMSTGLAHFTYTDFCLPDSIRARGV------------LTIPNYHYRDDGLKIWAAIERFVSEIVSYYYPSDASVQQDCELQAWVGEIFAQAFLGRESSGFPSRLCTPGELVKYLTAIIFNCSAQHAAFNSGQHDFGAWMPNAPSSMR 610          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LX15B_MOUSE (Arachidonate 15-lipoxygenase B OS=Mus musculus GN=Alox15b PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.194e-26
Identity = 71/199 (35.68%), Postives = 108/199 (54.27%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTT 599
            +T RQL   HP+++LL PH RYT+ IN LAR+ LV    +I+ S   G            +Q  +    LP+D+ +RG  VED          I  Y + +DG+ +W AIK +V++ V+ YYP  + V+ D+ELQAW  EI + G   ++      +L T + L++ IT +++  S  HAAV+ GQ+    + PN P T
Sbjct:  388 ATLRQLPRCHPLFKLLIPHIRYTLHINTLARELLVAPGKLIDKSTGLGTGGFSDLIKRNMEQLNYSVLCLPEDIRARG--VED----------IPGYYYRDDGMQIWGAIKSFVSEIVSIYYPSDTSVQDDQELQAWVREIFSEGFLGRESSGMPSLLDTREALVQYITMVIFTCSAKHAAVSSGQFDSCVWMPNLPPT 574          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LX12B_HUMAN (Arachidonate 12-lipoxygenase, 12R type OS=Homo sapiens GN=ALOX12B PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 3
Query:   12 RQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            R L + HP+Y+LL PH RYT++IN + R  L+N  G+     S G        V    +  +D   LP D + RG  V+D          +  Y + +D L +W+A++++VT+ + +YYP  + VE D ELQ+W  EI       ++   +   L+T  +LI  +T +++  S  HAAVN GQ  +  + PN P + R
Sbjct:  415 RNLPMCHPLYKLLIPHTRYTVQINSIGRAVLLNEGGLSAKGMSLGVEGFAGVMVRALSELTYDSLYLPNDFVERG--VQD----------LPGYYYRDDSLAVWNALEKYVTEIITYYYPSDAAVEGDPELQSWVQEIFKECLLGRESSGFPRCLRTVPELIRYVTIVIYTCSAKHAAVNTGQMEFTAWMPNFPASMR 600          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LX12B_RAT (Arachidonate 12-lipoxygenase, 12R type OS=Rattus norvegicus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25
Identity = 65/198 (32.83%), Postives = 104/198 (52.53%), Query Frame = 3
Query:   12 RQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            R L + HP+Y+LL PH RY ++IN + R  L+N  G+   + S G        V    +  +    +P D + RG  V+D          +  Y F +D L +W A++++VT+ + +YYP+ + VE D ELQ W  EI      +++   +   L+T  +LIE +T +++  S  HAAVN GQ  Y  + PN P++ R
Sbjct:  415 RNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSLCIPNDFVERG--VQD----------LPGYYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLERESSGFPTCLRTVPELIEYVTMVMYTCSARHAAVNTGQLEYTSWMPNFPSSMR 600          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.848e-25
Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 3
Query:   12 RQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            R L + HP+Y+LL PH RY ++IN + R  L+N  G+   + S G        V    +  +    +P D + RG  V+D          +  Y F +D L +W A++++VT+ + +YYP+ + VE D ELQ W  EI       ++   +   L+T  +LIE +T +++  S  HAAVN GQ  Y  + PN P++ R
Sbjct:  415 RNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSLCIPNDFVERG--VQD----------LPGYYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLGRESSGFPTCLRTIPELIEYVTMVMYTCSARHAAVNSGQLEYTSWMPNFPSSMR 600          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LX15B_HUMAN (Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=ALOX15B PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.399e-24
Identity = 65/197 (32.99%), Postives = 106/197 (53.81%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRP 593
            +T RQL   HP+++LL PH RYT+ IN LAR+ L+    +++ S   G            KQ  +    LP+D+ +RG  VED          I  Y + +DG+ +W A++++V++ +  YYP    V+ D ELQAW  EI + G  +++       L+T + L++ +T +++  S  HAAV+ GQ+    + PN P
Sbjct:  387 ATLRQLPHCHPLFKLLIPHTRYTLHINTLARELLIVPGQVVDRSTGIGIEGFSELIQRNMKQLNYSLLCLPEDIRTRG--VED----------IPGYYYRDDGMQIWGAVERFVSEIIGIYYPSDESVQDDRELQAWVREIFSKGFLNQESSGIPSSLETREALVQYVTMVIFTCSAKHAAVSAGQFDSCAWMPNLP 571          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.426e-22
Identity = 60/197 (30.46%), Postives = 102/197 (51.78%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRP 593
            +T RQL   HP+++LL PH RYT+ IN LAR+ L+    +++ S   G            +Q  +    LP+D+ +R +              +  Y + +DG+ +W AI+ +V++ V+ YYP  + V  D+ELQAW  EI + G   ++      +L T + L++ +T +++  S  HAAV+  Q+    + PN P
Sbjct:  388 ATLRQLPHCHPLFKLLIPHTRYTLHINTLARELLIAPGKVVDKSTGLGIGGFSDLIKRNMEQLSYSVLCLPEDIRARDVG------------DLPGYYYRDDGMQIWSAIRSFVSEIVDIYYPSDASVRDDQELQAWVGEIFSEGFLSQESSGMPSLLDTQEALVQYVTMVIFTCSAKHAAVSASQFDSCVWMPNLP 572          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX5_MESAU (Arachidonate 5-lipoxygenase OS=Mesocricetus auratus GN=ALOX5 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.256e-22
Identity = 63/204 (30.88%), Postives = 106/204 (51.96%), Query Frame = 3
Query:   12 RQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGL-AVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIAT 620
            RQL  +HPI++LL  H R+T+ IN  AR+ L+   G+ + + + G            +   +     P+ + +RG+ + ED          I  Y + +DGL +W+AI+ + ++ V+ YY D  +V  D+ELQ +  ++   G   +K   +   +K+ + L E +T +++  S  HAAVNFGQY +  + PN P T R   AT
Sbjct:  384 RQLPAVHPIFKLLVAHVRFTIAINTKAREQLICEYGLFDKANATGGGGHVQMVQRAVQDLTYSSLCFPEAIKARGMDSTED----------IPYYFYRDDGLLVWEAIQSFTSEVVSIYYEDDQVVMEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPAT 577          
The following BLAST results are available for this feature:
BLAST of FC876420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX2_PEA1.970e-6457.43Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOXE3_HUMAN1.425e-3034.33Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=A... [more]
LOXE3_MOUSE3.174e-3034.33Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
LX15B_MOUSE6.194e-2635.68Arachidonate 15-lipoxygenase B OS=Mus musculus GN=... [more]
LX12B_HUMAN1.057e-2532.83Arachidonate 12-lipoxygenase, 12R type OS=Homo sap... [more]
LX12B_RAT2.354e-2532.83Arachidonate 12-lipoxygenase, 12R type OS=Rattus n... [more]
LX12B_MOUSE6.848e-2532.83Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]
LX15B_HUMAN3.399e-2432.99Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=... [more]
LX15B_RAT5.426e-2230.46Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]
LOX5_MESAU9.256e-2230.88Arachidonate 5-lipoxygenase OS=Mesocricetus auratu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004E11EF DevOvary1 Citrus clementina cDNA clone C32004E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876420 ID=FC876420; Name=FC876420; organism=Citrus clementina; type=EST; length=650bp
ATAGCACCAATCGGCAACTCAGCGTGATGCATCCAATCTATAGATTGTTG
GATCCTCATTTTCGATACACAATGGAGATCAATGGTTTGGCTCGACAAGC
TCTTGTTAATGCTGATGGAATCATTGAAAGCTCATTCTCACCTGGAAAGT
ACTCTATGGAATTTAGCTCTGTTGCCTATGACAAGCAATGGCGCTTTGAC
CATGAAGCACTCCCCAAAGACCTAATTAGCCGGGGATTGGCTGTTGAAGA
TCCAAGTGCTCCACATGGCTTGAAGCTAACAATTGAAGACTATCCTTTTG
CCAATGATGGCCTTGATCTCTGGGATGCCATAAAACAATGGGTTACCGAT
TATGTTAATCACTACTACCCTGATAAAAGCCTTGTAGAATCTGATGAAGA
GCTCCAAGCTTGGTGGACTGAAATTCGAACTGTGGGACACGGTGACAAGA
AACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAGGATTTAATTGAA
ATCATCACAACTATTGTTTGGGTAACATCTGGTCACCACGCAGCTGTTAA
CTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATAGGCCAACCACTG
CAAGATGCAACATTGCCACTGAAGATCCATCTGATGAAACATGGAAATTC
back to top