FC876420

Overview
NameFC876420
Unique NameFC876420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1784..2433. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX5_RAT (Arachidonate 5-lipoxygenase OS=Rattus norvegicus GN=Alox5 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.693e-21
Identity = 62/199 (31.16%), Postives = 103/199 (51.76%), Query Frame = 3
Query:   12 RQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLA-VEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            RQL  +HP+++LL  H R+T+ IN  AR+ L    G+ + + + G            +   +     P+ + +RG+   ED          I  Y + +DGL +W+AI+ + T+ V+ YY D  +VE D+ELQ +  ++   G   +K   +   +K+ + L E +T +++  S  HAAVNFGQY +  + PN P T R
Sbjct:  384 RQLPAVHPLFKLLVAHVRFTIAINTKAREQLNCEYGLFDKANATGGGGHVQMVQRAVQDLTYSSLCFPEAIKARGMDNTED----------IPYYFYRDDGLLVWEAIQSFTTEVVSIYYEDDQVVEEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMR 572          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX5_MOUSE (Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alox5 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.693e-21
Identity = 61/201 (30.35%), Postives = 103/201 (51.24%), Query Frame = 3
Query:   12 RQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPF---ANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            RQL  +HP+++LL  H R+T+ IN  AR+ L+   G+ + + + G            +   +     P+ + +RG+             + ED PF    +DGL +W+AI+ +  + V+ YY +  +VE D+ELQ +  ++   G   KK   +   +K+ + L E +T +++  S  HAAVNFGQY +  + PN P T R
Sbjct:  385 RQLPAVHPLFKLLVAHVRFTIAINTKAREQLICEYGLFDKANATGGGGHVQMVQRAVQDLTYSSLCFPEAIKARGMD------------STEDMPFYFYRDDGLLVWEAIQSFTMEVVSIYYENDQVVEEDQELQDFVKDVYVYGMRGKKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMR 573          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX5_HUMAN (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.693e-21
Identity = 60/198 (30.30%), Postives = 101/198 (51.01%), Query Frame = 3
Query:   12 RQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            RQL  +HPI++LL  H R+T+ IN  AR+ L+   G+ + + + G            K   +     P+ + +RG+  ++          I  Y + +DGL +W+AI+ +  + V+ YY    +VE D ELQ +  ++   G   +K   +   +K+ + L E +T +++  S  HAAVNFGQY +  + PN P T R
Sbjct:  385 RQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKED---------IPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMR 573          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 3.517e-21
Identity = 66/201 (32.84%), Postives = 93/201 (46.27%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HPI++LL PH RYTMEIN  +R  L++  GI +   S G             Q  +     P DL +RGL            L I    +A D L LW+   ++V   V+ +Y    +V  D ELQAW  EI  VG    +   +    ++   L   +T  V+  +  HAA+N GQ  + G+ PN P T R
Sbjct:  374 ATMRCLPGLHPIFKLLVPHIRYTMEINTRSRTQLISDGGIFDQVVSTGGGGHVQLLTRAVAQLTYHSLCPPDDLANRGL------------LRIPSALYARDALQLWEVTARYVKGMVHLFYQSDDIVRGDPELQAWCREITEVGLCHAQDRGFPVSFQSRAQLCHFLTMCVFTCTAQHAAINQGQLDWYGWVPNAPCTMR 562          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX_PSEAE (Oleic acid lipoxygenase OS=Pseudomonas aeruginosa GN=lox PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.999e-21
Identity = 66/194 (34.02%), Postives = 102/194 (52.58%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFP 584
            +T R L+  HP++ LL PHF  T+ +N  A + L+ + G I+  F+      + ++      + F    LP+ L +R   V+DP+A       + DYP+ +DGL +W+AI+QW  DYV  YY     V +D EL AW  E+  +G G  K   + P+      L+E++T +++  S  HAAVNF Q     Y P
Sbjct:  391 ATQRTLAPSHPLHVLLAPHFEGTLFVNEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARN--VDDPAA-------LPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG--KVAGFRPITGR-SQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAP 570          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOXA_PSEAE (Arachidonate 15-lipoxygenase OS=Pseudomonas aeruginosa GN=loxA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.999e-21
Identity = 67/194 (34.54%), Postives = 101/194 (52.06%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFP 584
            +T R L+  HP++ LL PHF  T+ IN  A + L+ + G I+  F+      + ++      + F    LP+ L +R   V+DP       L + DYP+ +DGL +W+AI+QW  DYV  YY     V +D EL AW  E+  +G G  K   + P+      L+E++T +++  S  HAAVNF Q     Y P
Sbjct:  391 ATQRTLAPSHPLHVLLAPHFEGTLFINEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARN--VDDP-------LALPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG--KVAGFRPITGR-SQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAP 570          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LX12E_MOUSE (Arachidonate 12-lipoxygenase, epidermal-type OS=Mus musculus GN=Alox12e PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.836e-21
Identity = 66/201 (32.84%), Postives = 96/201 (47.76%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HPIY+LL PHFRYTMEIN LAR  LV+  GI +   S G                +     P DL  RGL         G+K ++    +A D L LW+ I ++V   V  +Y   + V+ D ELQ W  E+  VG    +   +   L++  +L   +   ++  +G HA+ + GQ  +  + PN P T R
Sbjct:  374 ATMRSLPSLHPIYKLLAPHFRYTMEINTLARNNLVSEWGIFDLVVSTGSGGHVDILQRATSCLTYRSFCPPDDLADRGLV--------GVKSSL----YAQDALRLWEIISRYVERMVELFYRSDTDVKEDPELQVWCREVTEVGLLGAQDRGFPLSLESRAELCRFVAMCIFTCTGQHASTHLGQLDWYAWIPNGPCTMR 562          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 65/201 (32.34%), Postives = 94/201 (46.77%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HPI++ L PH RYTMEIN  AR  L++  GI + + S G             Q  +     P DL  RGL            L +    +A+D L LW+ I ++V   V+ +Y    +V+ D ELQAW  EI  VG    +   +    ++   L   +T  V+  +  HAA+N GQ  +  + PN P T R
Sbjct:  374 ATMRCLPGLHPIFKFLIPHIRYTMEINTRARTQLISDGGIFDKAVSTGGGGHVQLLRRAAAQLTYCSLCPPDDLADRGL------------LGLPGALYAHDALRLWEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVGLCQAQDRGFPVSFQSQSQLCHFLTMCVFTCTAQHAAINQGQLDWYAWVPNAPCTMR 562          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX12_PIG (Arachidonate 12-lipoxygenase, 12S-type OS=Sus scrofa GN=ALOX12 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.930e-19
Identity = 69/205 (33.66%), Postives = 100/205 (48.78%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAW---WTEIRTVGHGDKKHEPWWPV-LKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HPI++LL PHFRYTMEIN  AR  LV+  GI +   S G                +     P DL  RGL            L +E   +A D L LW+ I ++V   V+ +Y     V+ D ELQAW   +TEI  +G  D+     +PV L++ + L   +T  ++  +G H++ + GQ  +  + PN P T R
Sbjct:  375 ATMRCLPSIHPIFKLLIPHFRYTMEINVRARNGLVSDLGIFDQVVSTGGGGHVELLRRAAALLTYSSFCPPDDLADRGL------------LGVESSFYAQDALRLWEVISRYVEGIVSLHYKTDESVKEDFELQAWCREFTEIGLLGAQDR----GFPVSLQSKEQLCHFVTMCIFTCTGQHSSNHLGQLDWYTWVPNAPCTMR 563          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: AOSL_PLEHO (Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.578e-19
Identity = 63/206 (30.58%), Postives = 104/206 (50.49%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIR----TVGHGDKKHEPWWPV-LKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            ST R L+  HP+++LL PH    + I+ + R+ L+ + GI++ S S G            K+       LP  L  RG  V+DPS   G       + + +DGL LW+AI+ ++ + +  +Y +   V+ D E+Q+W  ++      V  G + H    P   ++ + L E++T++V+  S  HAAVNF Q  + G+ PN P   R
Sbjct:  771 STWRNLASAHPVFKLLQPHIYGVLAIDTIGRKELIGSGGIVDQSLSLGGGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYYRDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGV--PASFESREQLKEVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAPAVLR 965          
The following BLAST results are available for this feature:
BLAST of FC876420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX5_RAT2.693e-2131.16Arachidonate 5-lipoxygenase OS=Rattus norvegicus G... [more]
LOX5_MOUSE2.693e-2130.35Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alo... [more]
LOX5_HUMAN2.693e-2130.30Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
LOX12_MOUSE3.517e-2132.84Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]
LOX_PSEAE5.999e-2134.02Oleic acid lipoxygenase OS=Pseudomonas aeruginosa ... [more]
LOXA_PSEAE5.999e-2134.54Arachidonate 15-lipoxygenase OS=Pseudomonas aerugi... [more]
LX12E_MOUSE7.836e-2132.84Arachidonate 12-lipoxygenase, epidermal-type OS=Mu... [more]
LOX12_HUMAN2.977e-2032.34Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
LOX12_PIG1.930e-1933.66Arachidonate 12-lipoxygenase, 12S-type OS=Sus scro... [more]
AOSL_PLEHO9.578e-1930.58Allene oxide synthase-lipoxygenase protein OS=Plex... [more]

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Properties
Property NameValue
Genbank descriptionC32004E11EF DevOvary1 Citrus clementina cDNA clone C32004E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876420 ID=FC876420; Name=FC876420; organism=Citrus clementina; type=EST; length=650bp
ATAGCACCAATCGGCAACTCAGCGTGATGCATCCAATCTATAGATTGTTG
GATCCTCATTTTCGATACACAATGGAGATCAATGGTTTGGCTCGACAAGC
TCTTGTTAATGCTGATGGAATCATTGAAAGCTCATTCTCACCTGGAAAGT
ACTCTATGGAATTTAGCTCTGTTGCCTATGACAAGCAATGGCGCTTTGAC
CATGAAGCACTCCCCAAAGACCTAATTAGCCGGGGATTGGCTGTTGAAGA
TCCAAGTGCTCCACATGGCTTGAAGCTAACAATTGAAGACTATCCTTTTG
CCAATGATGGCCTTGATCTCTGGGATGCCATAAAACAATGGGTTACCGAT
TATGTTAATCACTACTACCCTGATAAAAGCCTTGTAGAATCTGATGAAGA
GCTCCAAGCTTGGTGGACTGAAATTCGAACTGTGGGACACGGTGACAAGA
AACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAGGATTTAATTGAA
ATCATCACAACTATTGTTTGGGTAACATCTGGTCACCACGCAGCTGTTAA
CTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATAGGCCAACCACTG
CAAGATGCAACATTGCCACTGAAGATCCATCTGATGAAACATGGAAATTC
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