FC876420

Overview
NameFC876420
Unique NameFC876420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1784..2433. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX15_RABIT (Arachidonate 15-lipoxygenase OS=Oryctolagus cuniculus GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.634e-18
Identity = 59/201 (29.35%), Postives = 92/201 (45.77%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HP+++L+ PH RYT+EIN  AR  LV+  GI +   S G                +     P DL  RGL            L +E   +A D L LW+ I ++V   +  YY     V  D ELQ+W  EI  +G    + + +   L++       +T  ++  +G H++++ GQ  +  + PN P T R
Sbjct:  375 ATMRCLPSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYRSFCPPDDLADRGL------------LGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREITEIGLQGAQKQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIHLGQLDWFTWVPNAPCTMR 563          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX15_PONAB (Arachidonate 15-lipoxygenase OS=Pongo abelii GN=ALOX15 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.634e-18
Identity = 61/201 (30.35%), Postives = 93/201 (46.27%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HPI++L+ PH RYT+EIN  AR  LV+  GI +   S G                +     P DL  RGL            L ++   +A D L LW+ I ++V   V+ +Y     V+ D ELQ W  EI  +G    +   +   L++   +   +T  ++  +G HA+V+ GQ  +  + PN P T R
Sbjct:  374 ATMRCLPSIHPIFKLIIPHLRYTLEINVRARTGLVSDMGIFDQIMSTGGGGHVQLLKQAGAFLTYSSFCPPDDLADRGL------------LGVKSSFYAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQSRDQVCHFVTMCIFTCTGQHASVHLGQLDWYSWVPNAPCTMR 562          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX12_RABIT (Arachidonate 12-lipoxygenase, 12S-type OS=Oryctolagus cuniculus GN=ALOX12 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.634e-18
Identity = 59/201 (29.35%), Postives = 92/201 (45.77%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HP+++L+ PH RYT+EIN  AR  LV+  GI +   S G                +     P DL  RGL            L +E   +A D L LW+ I ++V   +  YY     V  D ELQ+W  EI  +G    + + +   L++       +T  ++  +G H++++ GQ  +  + PN P T R
Sbjct:  375 ATMRCLPSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYRSFCPPDDLADRGL------------LGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREITEIGLQGAQKQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIHLGQLDWFTWVPNAPCTMR 563          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX15_HUMAN (Arachidonate 15-lipoxygenase OS=Homo sapiens GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.134e-18
Identity = 61/201 (30.35%), Postives = 92/201 (45.77%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HPI++L+ PH RYT+EIN  AR  LV+  GI +   S G                +     P DL  RGL            L ++   +A D L LW+ I ++V   V+ +Y     V+ D ELQ W  EI  +G    +   +   L+    +   +T  ++  +G HA+V+ GQ  +  + PN P T R
Sbjct:  374 ATMRCLPSIHPIFKLIIPHLRYTLEINVRARTGLVSDMGIFDQIMSTGGGGHVQLLKQAGAFLTYSSFCPPDDLADRGL------------LGVKSSFYAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQARDQVCHFVTMCIFTCTGQHASVHLGQLDWYSWVPNAPCTMR 562          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LOX12_BOVIN (Arachidonate 12-lipoxygenase, 12S-type OS=Bos taurus GN=ALOX12 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.787e-18
Identity = 59/201 (29.35%), Postives = 92/201 (45.77%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HP+++LL PH RYTMEIN  AR  LV+  G+ +   S G                +     P DL  RGL            L ++   +A D L LW+ + ++V   V+ +Y     V  D ELQAW  +I  +G    +   +   L++   L   +T  ++  +G H++ + GQ  +  + PN P T R
Sbjct:  375 ATMRCLPSIHPMFKLLIPHLRYTMEINIRARTGLVSDSGVFDQVVSTGGGGHVELLQRAGAFLTYSSFCPPDDLADRGL------------LGVKSSFYAQDALRLWEILSRYVEGIVSLHYKTDESVRDDIELQAWCRDITEIGLLGAQDRGFPVTLQSKDQLCHFVTMCIFTCTGQHSSTHLGQLDWYSWVPNAPCTMR 563          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LX12L_MOUSE (Arachidonate 12-lipoxygenase, leukocyte-type OS=Mus musculus GN=Alox12l PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 8.965e-17
Identity = 57/201 (28.36%), Postives = 88/201 (43.78%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HP+++LL PH  YTMEIN  AR  L++  G  +   S G                +     P DL  RGL            L I+   +A D L LW  + ++V    + YY     V+ D ELQ+W  EI  +G    +   +   L++       IT  ++  +  H++++ GQ  +  + PN P T R
Sbjct:  375 ATMRCLPSVHPVFKLLVPHLLYTMEINVRARSDLISERGFFDKVMSTGGGGHLDLLKQAGAFLTYSSLCPPDDLAERGL------------LDIDTCFYAKDALQLWQVMNRYVVGMFDLYYKTDQAVQDDYELQSWCQEITEIGLQGAQDRGFPTSLQSRAQACHFITMCIFTCTAQHSSIHLGQLDWFYWVPNAPCTMR 563          
BLAST of FC876420 vs. ExPASy Swiss-Prot
Match: LX12L_RAT (Arachidonate 12-lipoxygenase, leukocyte-type OS=Rattus norvegicus GN=Alox12l PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.171e-16
Identity = 59/201 (29.35%), Postives = 89/201 (44.28%), Query Frame = 3
Query:    3 STNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTAR 605
            +T R L  +HP+++LL PH  YTMEIN  AR  L++  G  + + S G                +     P DL  RGL            L IE   +A D L LW  + ++V    N +Y     V+ D ELQ+W  EI  +G    +   +   L++       IT  ++  +  H++V+ GQ  +  + PN P T R
Sbjct:  375 ATMRCLPSVHPVFKLLVPHLLYTMEINVRARSDLISERGFFDKAMSTGGGGHLDLLKQAGAFLTYCSLCPPDDLAERGL------------LDIETCFYAKDALRLWQIMNRYVVGMFNLHYKTDKAVQDDYELQSWCREITDIGLQGAQDRGFPTSLQSRAQACYFITMCIFTCTAQHSSVHLGQLDWFYWVPNAPCTMR 563          
The following BLAST results are available for this feature:
BLAST of FC876420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX15_RABIT1.634e-1829.35Arachidonate 15-lipoxygenase OS=Oryctolagus cunicu... [more]
LOX15_PONAB1.634e-1830.35Arachidonate 15-lipoxygenase OS=Pongo abelii GN=AL... [more]
LOX12_RABIT1.634e-1829.35Arachidonate 12-lipoxygenase, 12S-type OS=Oryctola... [more]
LOX15_HUMAN2.134e-1830.35Arachidonate 15-lipoxygenase OS=Homo sapiens GN=AL... [more]
LOX12_BOVIN2.787e-1829.35Arachidonate 12-lipoxygenase, 12S-type OS=Bos taur... [more]
LX12L_MOUSE8.965e-1728.36Arachidonate 12-lipoxygenase, leukocyte-type OS=Mu... [more]
LX12L_RAT1.171e-1629.35Arachidonate 12-lipoxygenase, leukocyte-type OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionC32004E11EF DevOvary1 Citrus clementina cDNA clone C32004E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876420 ID=FC876420; Name=FC876420; organism=Citrus clementina; type=EST; length=650bp
ATAGCACCAATCGGCAACTCAGCGTGATGCATCCAATCTATAGATTGTTG
GATCCTCATTTTCGATACACAATGGAGATCAATGGTTTGGCTCGACAAGC
TCTTGTTAATGCTGATGGAATCATTGAAAGCTCATTCTCACCTGGAAAGT
ACTCTATGGAATTTAGCTCTGTTGCCTATGACAAGCAATGGCGCTTTGAC
CATGAAGCACTCCCCAAAGACCTAATTAGCCGGGGATTGGCTGTTGAAGA
TCCAAGTGCTCCACATGGCTTGAAGCTAACAATTGAAGACTATCCTTTTG
CCAATGATGGCCTTGATCTCTGGGATGCCATAAAACAATGGGTTACCGAT
TATGTTAATCACTACTACCCTGATAAAAGCCTTGTAGAATCTGATGAAGA
GCTCCAAGCTTGGTGGACTGAAATTCGAACTGTGGGACACGGTGACAAGA
AACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAGGATTTAATTGAA
ATCATCACAACTATTGTTTGGGTAACATCTGGTCACCACGCAGCTGTTAA
CTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATAGGCCAACCACTG
CAAGATGCAACATTGCCACTGAAGATCCATCTGATGAAACATGGAAATTC
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