FC876421

Overview
NameFC876421
Unique NameFC876421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:4..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: ARAE3_ORYSJ (Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 50/171 (29.24%), Postives = 85/171 (49.71%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAY 650
            ++L+TG AG+I SH   RL+++   Y++ ++D L   +      L+ L P       +F+  D+     VN +    + D +MHFAA  +V  S      +  N    T ++LEA    G ++  I+ ST   YGE ++  +V   E ++ LP NPY   K  AE +++ +
Sbjct:   65 HVLVTGGAGYIGSHASLRLLKD--NYRVTIVDNLSRGNMGAVKVLQELFPQPG--RLQFIYADLGDQKTVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLLILEAMASHG-VKTLIYSSTCATYGEPEKMPIV---ETTRQLPINPYGKAKKMAEDIILDF 227          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 49/174 (28.16%), Postives = 86/174 (49.43%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 659
            ++L+TG AG+I SH   RL+++   Y++ ++D L          L+ L P       +F+  D+  A+ VN +    + D +MHFAA  +V  S     ++  N    T V+LE     G ++  I+ ST   YGE ++  +    E +  +P NPY   K  AE +++ + ++
Sbjct:   71 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNLGAVKILQQLFPEPGK--LQFIYADLGDANAVNKIFSENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHG-VKTLIYSSTCATYGEPEKMPIT---EETPQVPINPYGKAKKMAEDIILDFSKN 236          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: EXOB_AZOBR (UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 55/177 (31.07%), Postives = 85/177 (48.02%), Query Frame = 3
Query:  138 TYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 668
            T     +L+TG AG+I SHV + L         V +D  D  +  +  IP+        V+GDI SA+L++ ++    +D +MHFA    V  S     ++ +NN   +  LL AC   G I + +  ST  VYG  +    V   E +  +P NPY A+K   E ++   G ++GL
Sbjct:    5 TAASPRVLVTGGAGYIGSHVLHALTD--AGIPAVTID--DLSAGRREAIPAAVP----LVEGDIGSAELLDRVMRDHRVDAVMHFAGSIVVPESVVKPLDYYRNNTANSLTLLGACLRAG-IDKVVFSSTAAVYGAPES---VPIREDAPTVPINPYGASKLMTEQMLRDAGAAHGL 169          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 52/180 (28.89%), Postives = 85/180 (47.22%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            ++L+TG AG+I SH   RL+R+   Y++ ++D L   +      L+ L P       +F+  D+  A  VN +    + D +MHFAA  +V  S      +  N    T  +LEA      ++  I+ ST   YGE D   +    EA+   P NPY   K  AE +++ + +   + V+
Sbjct:   51 HVLVTGGAGYIGSHATLRLLRD--NYRVTIVDNLSRGNMGAVRVLQRLFPEPG--RLQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEA-MAAYNVKTLIYSSTCATYGEPDTMPIT---EATPQNPINPYGKAKKMAEDIILDFSKRSEMAVM 222          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 49/174 (28.16%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 659
            ++L+TG AG+I SH   RL+++   +++ ++D L   +      L+NL         +F+  D+     VN +    + D +MHFAA  +V  S      +  N    T V+LEA      +R  I+ ST   YGE ++  +    E +   P NPY   K  AE +++ + +S
Sbjct:   74 HVLVTGGAGYIGSHAALRLLKD--SFRVTIVDNLSRGNMGAIKVLQNLFSEPG--RLQFIYADLGDPKAVNRIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVLEA-MAAHNVRTLIYSSTCATYGEPEKMPIT---EGTPQFPINPYGKAKKMAEDIILDFSKS 239          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 60/188 (31.91%), Postives = 86/188 (45.74%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD--YCSNLKNLIPSKASSNFKFV-KGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIH-PWKTCYGP 704
            ++L+TGA GF+ SHV   L +      +V LD  +  Y  +LK    S  SS   FV +GD+  A L+  L    +   +MH AAQ  V  +  N   +  +NI G   LLE CK        +  S+  VYG  ++     +    Q  P + Y+ATK   E +   Y   YGL +    + T YGP
Sbjct:   89 SVLVTGATGFVGSHVSLALRKRGDG--VVGLDNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQ--PASLYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGP 272          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBE_SALTI (CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 56/196 (28.57%), Postives = 91/196 (46.43%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDE-------------DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL-PVIHPWKTCYG 701
            +LITG  GF+ S++ +  +    +  ++V D L       NL    +  NF+FV GDI + + V  L+     D+  H A Q  +  S  N     + N+ GT  LLEA +        I+ ST++VYG+ ++             D   G  E++QL   +PY  +K  A+  ++ Y R +GL  V+    + YG
Sbjct:    3 LLITGGCGFLGSNLASFALSQGID--LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYG 196          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD--YCSNLK-NLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIH-PWKTCYGP 704
            ILITG AGFI SH+  +LI+    + ++ +D ++  Y  +LK + + S    NF F K  + + D ++ + + E  + +++ AAQ  V  S  N   +  +NI G   +LE C     I+  I+ S+  VYG         +       P + Y+ATK   E++   Y   Y LP     + T YGP
Sbjct:    3 ILITGTAGFIGSHLAKKLIKQ--GHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFNIQNLIYASSSSVYGANTSKPFSTSDNIDH--PLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVYGP 184          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 48/180 (26.67%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD-----YCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            ++L+TG AG+I SH   RL+R+   Y++ ++D L          L+ L P   +   +F+  D+     V  +    + D +MHFAA  +V  S     ++  N    T  +LEA     ++++ I+ ST   YGE ++  +    E +  +P NPY   K  AE +++ + ++  + V+
Sbjct:   96 HVLVTGGAGYIGSHAALRLLRD--SYRVTIVDNLSRGNLGAVKTLQQLFPQ--TGRLQFIYADLGDPLAVEKIFSENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLEA-MARHKVKKLIYSSTCATYGEPEKMPIT---EDTPQVPINPYGKAKKMAEDMILDFSKNSDMAVM 267          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_LACCA (UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 54/174 (31.03%), Postives = 84/174 (48.28%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            I + G AG+I SH   +L+    +  +VVLD L   +  +  +  +A    +F +GDI     ++ +   E ID I+HFAA + V  S  +  ++  NN  G   LLEA    G I++ +  ST   YGE  +   V   E    +PTNPY  +K   E ++     +YGL  +
Sbjct:    3 IAVLGGAGYIGSHTVKQLLAAGED--VVVLDNL--ITGHRKAVDPRA----RFYQGDIRDYHFLSQVFSQEKIDGIVHFAAFSIVPESMKDPLKYFDNNTGGMITLLEAMNQFG-IKKIVFSSTAATYGEPKQ---VPIKETDPQVPTNPYGESKLAMEKIMHWADVAYGLKFV 164          
The following BLAST results are available for this feature:
BLAST of FC876421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ARAE3_ORYSJ1.075e-1329.24Probable UDP-arabinose 4-epimerase 3 OS=Oryza sati... [more]
ARAE2_ARATH1.075e-1328.16Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
EXOB_AZOBR1.833e-1331.07UDP-glucose 4-epimerase OS=Azospirillum brasilense... [more]
ARAE2_ORYSJ2.395e-1328.89Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
ARAE1_ORYSJ6.967e-1328.16Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]
GAE1_ARATH9.099e-1331.91UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
RFBE_SALTI2.648e-1228.57CDP-paratose 2-epimerase OS=Salmonella typhi GN=rf... [more]
CAPI_STAAU2.648e-1229.95Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
ARAE4_ARATH2.648e-1226.67Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]
GALE_LACCA5.898e-1231.03UDP-glucose 4-epimerase OS=Lactobacillus casei GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004E12EF DevOvary1 Citrus clementina cDNA clone C32004E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876421 ID=FC876421; Name=FC876421; organism=Citrus clementina; type=EST; length=706bp
GACTCTTCAAAAGATCACTGCGGTTTCTTCTCAGTTTCCATTTTCAACAC
AGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCTTC
GTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCCGA
AGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTATGC
AACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGACAA
GCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATCCT
CCAACTTTAAGTTTGTTAAGGGGGACATTGCCAGTGCTGACCTTGTCAAC
TTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCGCA
AACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAACA
ATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGCAG
ATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACTGA
CGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAACAA
ATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTTAT
GGTAGGTCATATGGGCTACCAGTGATACACCCGTGGAAAACATGTTATGG
ACCAAT
back to top