FC876421

Overview
NameFC876421
Unique NameFC876421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:4..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_KLEPN (UDP-glucose 4-epimerase (Fragment) OS=Klebsiella pneumoniae GN=galE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 40/133 (30.08%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE 545
            +L+TG +G+I SH C +L++    +++V+LD L  C++ + ++P           F++GDI +   +  +L   +I+ ++HFA    V  S     E+  NN+ GT  L+ A +  G ++ FI  S+  VYG+
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQR--GHEVVILDNL--CNSKRRILPVIERLGGKEATFIEGDIRNEARMTEILHDHAIEAVIHFAGLKAVGESVAKPLEYYDNNVTGTLKLVSAMRAAG-VKNFIFSSSATVYGD 130          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_NEIMA (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup A GN=galE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 49/172 (28.49%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGET-----DEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            KNIL+TG  GFI SH    L+++   +++V+LD L  C++  N++P   +       F +GDI   +++  +     ID+++HFA    V  S     ++  NN+ G+ VL E     G +   +  S+  VYG+       ED  +G+        T+PY  +K+  E ++
Sbjct:    2 KNILVTGGTGFIGSHTVVSLLKS--GHQVVILDNL--CNSSINILPRLKTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAG-VFSIVFSSSATVYGDPGKVPYTEDMPLGD-------TTSPYGTSKSMVERIL 161          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_NEIGO (UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae GN=galE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 49/165 (29.70%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSK---ASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            +LITG  GFI SH    L+++   Y  V+LD L  C++   ++P        N  F +GDI    ++  +     I++++HFA    V  S     ++  NN+YG+ VL E     G + + +  S+  VYG  D + V    +       NPY A+KA  E ++
Sbjct:    3 VLITGGTGFIGSHTAVSLVQS--GYDAVILDNL--CNSSAAVLPRLRQITGRNIPFYQGDIRDCQILRQIFSEHEIESVIHFAGLKAVGESVAEPTKYYGNNVYGSLVLAEEMARAG-VLKIVFSSSATVYG--DAEKVPYTEDMRPGDTANPYGASKAMVERML 160          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 52/171 (30.41%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 668
            +L+ G AG+I SH    L++   +  ++VLD L Y  + K + P       KF +GDI    LV+ +L  E ID +MHFAA + V  S     ++  NN+ G   LL+A      ++  +  S+   YG   +  +    E + L P NPY  TK   E ++    ++ G+
Sbjct:    3 VLVIGGAGYIGSHAVRELVKEGND--VLVLDAL-YTGHRKAVDPKA-----KFYQGDIEDTFLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMN-DANVKYLVFSSSAATYGIPKKLPIT---EDTPLNPINPYGETKMMMEKIMAWADKADGI 161          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL-DYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE-TDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            IL+TG AG+I SH    LI +   YK++++D L + C +    +      + KF K D+   + +  +  T  I  ++HFAA   V  S     E+  NNI GT  LL   +   +++  +  S+  VYG+ T  D ++   E+    PTNPY  TK   E ++
Sbjct:    8 ILVTGGAGYIGSHTVIELINH--GYKVIIVDNLCNSCYDAVARVEFIVRKSIKFFKLDLRDKEGLAQIFDTFKIKGVIHFAALKAVGESMKLPLEYYDNNICGTITLLNVMR-EHRVKTVVFSSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKYAIENII 168          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 58/187 (31.02%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD--YCSNLKNLIPSKAS-SNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIH-PWKTCYGP 704
            +L+TGAAGF+ +HV   L R      ++ LD  +  Y  +LK    +    S    V+GDI   +L+  L    S   +MH AAQ  V  +  N   +  +NI G   LLE CK        +  S+  VYG   +       +  Q  P + Y+ATK   E +   Y   YGL +    + T YGP
Sbjct:   99 VLVTGAAGFVGTHVSAALKRRGDG--VIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTDQ--PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGP 281          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: EXOB_RHIME (UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=exoB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 59/178 (33.15%), Postives = 77/178 (43.26%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVK------GDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 668
            NIL+ G AG+I SH C +L      Y+ VV D L             ++ + +FVK      GDI     ++ +L       I+HFAA   V  S  +   F  NN+ GT  LL A    G I  F+  ST   YG  D    V   E+ +  P NPY  TK   E  +  YG   GL
Sbjct:    5 NILVVGGAGYIGSHTCLQLAAK--GYQPVVYDNL-------------SNGHEEFVKWGVLEKGDIRDRQRLDEVLARHKPRAILHFAAMIEVGESVKDPAAFYDNNVIGTLTLLSAALAAG-IDAFVFSSTCATYGLPDS---VPMDESHKQAPINPYGRTKWICEQALKDYGLYKGL 163          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_ERWAM (UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 51/171 (29.82%), Postives = 81/171 (47.37%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLK-NLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQL-LPTNPYSATKAGAEMLVMAYGRS 659
            +IL+TG AG+I SH    L++   +  +V+LD L   S    N +         F +GD+     +  +     I  ++HFA    V  S     E+ +NN+ GT VLLE  +  G + +FI  S+  VYG    DA V   E + +   T+PY  +K   E ++  Y ++
Sbjct:    2 SILVTGGAGYIGSHTVLSLLQRGDD--VVILDNLSNASRESINRVEKLTGKTATFFEGDLLDRSCLRSVFSAHRISAVIHFAGLKAVGASTRKPLEYYQNNVTGTLVLLEEMRSAG-VNQFIFSSSATVYG---ADAPVPYVETTPIGGTTSPYGTSKLMVEQILRDYAKA 166          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLL-ITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            IL+ G AG+I SH+ +RLI    E ++VV+D L    +   + P+      KF +GD+A  + ++ +      +D ++HFAA + V  S     ++  NN  G   LLE     G ++  +  ST   YG  DE  +    E +   P NPY  +K   E ++    R+YG+  +
Sbjct:    3 ILVLGGAGYIGSHMVDRLIEK-GEEEVVVVDSL-VTGHRAAVHPAA-----KFYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFG-VKYIVFSSTAATYGIPDEIPI---KETTPQRPINPYGESKLMMETIMKWSDRAYGIKFV 166          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_PASHA (UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLK-NLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            IL+TG AG+I SH    L+    E  IVVLD L   S +    +      + KF +GDI   D++  +     I++++HFA    V  +  N +   KNN+ G+ VL+E   +   +   +  S+  VYG+     +V +        TNPY  +K   E ++
Sbjct:    3 ILVTGGAGYIGSHTLVELLNENRE--IVVLDNLSNSSEVSLERVKQITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGETSENRYVTIKNNVTGSIVLVEE-MLKANVNTIVFSSSATVYGDPQIIPIVESCPVGG--TTNPYGTSKYMVERIL 160          
The following BLAST results are available for this feature:
BLAST of FC876421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
GALE_KLEPN5.898e-1230.08UDP-glucose 4-epimerase (Fragment) OS=Klebsiella p... [more]
GALE_NEIMA7.703e-1228.49UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_NEIGO1.006e-1129.70UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae G... [more]
GALE_LACHE1.006e-1130.41UDP-glucose 4-epimerase OS=Lactobacillus helveticu... [more]
GAL10_SCHPO1.006e-1131.10Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]
GAE4_ARATH1.006e-1131.02UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
EXOB_RHIME1.006e-1133.15UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=e... [more]
GALE_ERWAM1.314e-1129.82UDP-glucose 4-epimerase OS=Erwinia amylovora GN=ga... [more]
GALE_STRMU2.241e-1129.71UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]
GALE_PASHA2.241e-1129.45UDP-glucose 4-epimerase OS=Pasteurella haemolytica... [more]

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Properties
Property NameValue
Genbank descriptionC32004E12EF DevOvary1 Citrus clementina cDNA clone C32004E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876421 ID=FC876421; Name=FC876421; organism=Citrus clementina; type=EST; length=706bp
GACTCTTCAAAAGATCACTGCGGTTTCTTCTCAGTTTCCATTTTCAACAC
AGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCTTC
GTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCCGA
AGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTATGC
AACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGACAA
GCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATCCT
CCAACTTTAAGTTTGTTAAGGGGGACATTGCCAGTGCTGACCTTGTCAAC
TTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCGCA
AACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAACA
ATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGCAG
ATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACTGA
CGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAACAA
ATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTTAT
GGTAGGTCATATGGGCTACCAGTGATACACCCGTGGAAAACATGTTATGG
ACCAAT
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