FC876421

Overview
NameFC876421
Unique NameFC876421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:4..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_NEIMC (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup C GN=galE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            K IL+TG  GFI SH    L+++   +++V+LD L  C++  N++P   +       F +GDI   +++  +     ID+++HFA    V  S     ++  NN+ G+ VL E     G + + +  S+  VYG  D   V    +      T+PY  +K+  E ++
Sbjct:    2 KKILVTGGTGFIGSHTVVSLLKS--GHQVVILDNL--CNSSINILPRLKTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAG-VFKIVFSSSATVYG--DPGKVPYTEDMQPGDTTSPYGTSKSMVERIL 161          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_NEIMB (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B GN=galE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 48/167 (28.74%), Postives = 82/167 (49.10%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            K IL+TG  GFI SH    L+++   +++V+LD L  C++  N++P   +       F +GDI   +++  +     ID+++HFA    V  S     ++  NN+ G+ VL E     G +   +  S+  VYG  D   V    +      T+PY A+K+  E ++
Sbjct:    2 KKILVTGGTGFIGSHTVVSLLKS--GHQVVILDNL--CNSSINILPRLKTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAG-VFSIVFSSSATVYG--DPGKVPYTEDMPPGDTTSPYGASKSMVERIL 161          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_HAEIN (UDP-glucose 4-epimerase OS=Haemophilus influenzae GN=galE PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 56/170 (32.94%), Postives = 81/170 (47.65%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYC-SNLKNL--IPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE-----TDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            IL+TG AG+I SH    L+    E  +VVLD L  C S+ K+L  +        KF +GDI    L+  +     I++++HFA    V  S     E+  NN+ GT VL++  K  G +  F+  S+  VYG+       ED  VG         TNPY  +K   E ++
Sbjct:    3 ILVTGGAGYIGSHTVVELLNVGKE--VVVLDNL--CNSSPKSLERVKQITGKEAKFYEGDILDRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAG-VWNFVFSSSATVYGDPKIIPITEDCEVGG-------TTNPYGTSKYMVEQIL 160          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE1_PEA (UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 46/162 (28.40%), Postives = 76/162 (46.91%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYC-----SNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATK 620
            + IL+TG+AGFI +H   +L+ N   + + ++D  D         ++ ++ S  S N +F  GD+ + D +  L      D ++HFA    V  S  N   +  NN+ GT  L E        ++ +  S+  VYG+ ++   V   E  +L   NPY  TK
Sbjct:    6 QKILVTGSAGFIGTHTVVQLLNN--GFNVSIIDNFDNSVMEAVERVREVVGSNLSQNLEFTLGDLRNKDDLEKLFSKSKFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYEV-MAKHNCKKMVFSSSATVYGQPEKIPCV---EDFKLQAMNPYGRTK 161          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 58/188 (30.85%), Postives = 83/188 (44.15%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD--YCSNLKNLIPSKASSNFKFV-KGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIH-PWKTCYGP 704
            ++L+TGAAGF+ +HV   L R      ++ LD  +  Y  +LK    +    +  FV +GDI  A L+  L        +MH AAQ  V  +  N   +  +NI G   LLE CK        +  S+  VYG   +          Q  P + Y+ATK   E +   Y   YGL +    + T YGP
Sbjct:   92 SVLVTGAAGFVGTHVSAALKRRGDG--VLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ--PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGP 275          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 56/188 (29.79%), Postives = 82/188 (43.62%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD--YCSNLKNLIPSKASSNFKF-VKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIH-PWKTCYGP 704
            ++L+TGAAGF+ SH C+  +R   +  ++  D  +  Y  +LK            F V+GD+    L+  L        I+H AAQ  V  +  N   +  +NI G   LLE  K        +  S+  VYG   E+     H   Q  P + Y+ATK   E +   Y   YGL +    + T YGP
Sbjct:  113 SVLVTGAAGFVGSH-CSLALRKRGD-GVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNTENPFSEEHRTDQ--PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGP 296          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_DROME (Probable UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=CG12030 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 50/172 (29.07%), Postives = 76/172 (44.19%), Query Frame = 3
Query:  147 PKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL--DYCSNLK-----NLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            P  +L+TG AG+I SH    ++     Y ++ +D L   Y S  K     + +         F + DI   + V  +     ID + HFAA   V  S     ++  NN+ GT+VLLEA      + +F++ S+  VYGE     V   H       T+PY  TK   E ++
Sbjct:    3 PPTVLVTGGAGYIGSHTVLEMLN--AGYNVICVDNLCNAYSSGAKLPEALSRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCRIPLQYYHNNMTGTNVLLEA-MADNNVFKFVYSSSATVYGEPKFLPVTEEHPTGNC--TSPYGKTKYFTEEIL 169          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 57/188 (30.32%), Postives = 83/188 (44.15%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD--YCSNLKNLIPSKASSNFKF-VKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIH-PWKTCYGP 704
            ++L+TGAAGF+ +HV   L R      ++ LD  +  Y ++LK    +    +  F V+GDI    L+  L        +MH AAQ  V  +  N   +  +NI G   LLE CK        +  S+  VYG   +          Q  P + Y+ATK   E +   Y   YGL +    + T YGP
Sbjct:   93 SVLVTGAAGFVGTHVSAALKRRGDG--VLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ--PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGP 276          
The following BLAST results are available for this feature:
BLAST of FC876421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
GALE_NEIMC2.241e-1128.14UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_NEIMB2.241e-1128.74UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_HAEIN2.241e-1132.94UDP-glucose 4-epimerase OS=Haemophilus influenzae ... [more]
GALE1_PEA2.927e-1128.40UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE P... [more]
GAE3_ARATH2.927e-1130.85UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE6_ARATH4.993e-1129.79UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
GALE_DROME6.521e-1129.07Probable UDP-glucose 4-epimerase OS=Drosophila mel... [more]
GAE2_ARATH6.521e-1130.32UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC32004E12EF DevOvary1 Citrus clementina cDNA clone C32004E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876421 ID=FC876421; Name=FC876421; organism=Citrus clementina; type=EST; length=706bp
GACTCTTCAAAAGATCACTGCGGTTTCTTCTCAGTTTCCATTTTCAACAC
AGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCTTC
GTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCCGA
AGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTATGC
AACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGACAA
GCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATCCT
CCAACTTTAAGTTTGTTAAGGGGGACATTGCCAGTGCTGACCTTGTCAAC
TTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCGCA
AACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAACA
ATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGCAG
ATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACTGA
CGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAACAA
ATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTTAT
GGTAGGTCATATGGGCTACCAGTGATACACCCGTGGAAAACATGTTATGG
ACCAAT
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