FC876424

Overview
NameFC876424
Unique NameFC876424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10357 contig Ccv1_Contig10357:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KIF2B_MACFA (Kinesin-like protein KIF2B OS=Macaca fascicularis GN=KIF2B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 63/176 (35.80%), Postives = 94/176 (53.41%), Query Frame = 3
Query:   24 QAAEGGTQEVP--GLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSER-VGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSS-LGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIES 539
            Q  E G Q++   GL E +V   EEV  L++ G   R+   T+ N  SSRSH + ++ +K    ++G+ +     LVDLAG+ER     +   +R  E   INKSL AL + I AL     H P+R SKLT +L+ S +G +  T M   ISP  +    T  +L +A+RV+ + +
Sbjct:  372 QVLEDGNQQIQVVGLQEQEVCCVEEVLNLVELGNSCRTSRQTSVNAHSSRSHAVFQIILKSGGKLHGKFS-----LVDLAGNERGADTTKASRKRQLEGAEINKSLLALKECILALGQNKPHTPFRASKLTQVLRDSFIGRNSSTCMIATISPGMTSCENTLNTLRYANRVKELNA 542          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KIF2B_HUMAN (Kinesin-like protein KIF2B OS=Homo sapiens GN=KIF2B PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 63/172 (36.63%), Postives = 93/172 (54.07%), Query Frame = 3
Query:   24 QAAEGGTQEVP--GLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSER-VGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSS-LGGDCKTLMFVQISPSSSDLGETPCSLNFASRVR 527
            Q  E G Q++   GL E +V   EEV  L++ G   R+   T+ N  SSRSH + ++ +K   +++G+ +     LVDLAG+ER     +   +R  E   INKSL AL + I AL     H P+R SKLT +L+ S +G +  T M   ISP  +    T  +L +A+RV+
Sbjct:  375 QVLEDGNQQIQVVGLQEKEVCCVEEVLNLVEIGNSCRTSRQTSVNAHSSRSHAVFQIILKSGRIMHGKFS-----LVDLAGNERGADTTKASRKRQLEGAEINKSLLALKECILALGQNKPHTPFRASKLTLVLRDSFIGQNSSTCMIATISPGMTSCENTLNTLRYANRVK 541          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: YOG1_SCHPO (Kinesin-like motor protein C15D4.01c OS=Schizosaccharomyces pombe GN=SPBC15D4.01c PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 67/230 (29.13%), Postives = 107/230 (46.52%), Query Frame = 3
Query:   12 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISAL----ASKSGHIPYRNSKLTHILQSS--LGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARK----QSDISELFKYKQMAEKLKQDEKETKKLQDNLQSVQLRLA 671
            L +K+++    + + G+ +  V  T E ++L++   ++R   ST +N +SSRSH ++ + +      + +     + LVDLAGSER    E  G  L+E   IN+SL  LG  + AL      K   IP+R SKLT +L  S  L G     M V I P  S   E    + +++  R I   P  +    QS    L +  +     K      ++LQ   Q +++ LA
Sbjct:  214 LSLKKSSTSDKKSIAGIQKVFVSNTTEAYKLIQKVLQLRKSTSTKSNSVSSRSHLIMSIELFKVCTKSNKFESCQIDLVDLAGSERTRSAETSGLLLREGASINRSLLTLGQCLEALRRKHEGKQHIIPFRQSKLTELLFHSGHLSGLAGINMLVNIDPFGS-FDENAQVMRYSANAREILPPPLNENSGSQSPSHSLLQKSKNTSSTKALTSHLEQLQQENQQLRMLLA 442          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: NOD_DROME (Kinesin-like protein Nod OS=Drosophila melanogaster GN=nod PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 52/157 (33.12%), Postives = 80/157 (50.96%), Query Frame = 3
Query:   75 VYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGP 545
            ++   ++  +L+ G R R V  TN N  SSRSH ++ + VK +         S + +VDLAGSE V +   +G   +E   IN  L ++  V+ ++A+    IPYR+S LT +LQ+SL           ISP   DL ET  +L F +  + +   P
Sbjct:  174 LHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT------HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLRLNP 324          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KLP8_SCHPO (Kinesin-like protein 8 OS=Schizosaccharomyces pombe GN=klp8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 62/221 (28.05%), Postives = 113/221 (51.13%), Query Frame = 3
Query:   57 GLTEAQVYGTEEVWELLKSGAR-VRSVGSTNANELSS--RSHCLLRVTVKGENLINGQ-----KTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGH--IPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGI---------ESGPARKQSDISE-LFKYKQMAEKLKQDEKETKKLQDNLQSVQ 659
            GL+E +V   +E+   L+  A+ +R    T  +++S   + H +  + V+ + +I+ +     K  S L ++DLA   + G    +     ES   NKSLS L  VI+AL SK     IPY++S LT +LQ +LGG+C+T+M   +SP   D  +T  +L ++   R I         E+     + ++ + L   +   E+L++ E+ ++KL   ++ ++
Sbjct:  196 GLSEFEVGSAQEIDAFLRLAAKNIR----TELSDISGVRKGHSVFSLVVQ-QRIIDPKTRHSLKKASRLQIIDLASFSK-GSQRNESISSFESSSNNKSLSVLNRVIAALTSKKNDVLIPYKDSVLTTLLQDALGGNCRTIMLTCVSP--CDFDDTFSALRYSEAARRIKNISNINCKEAYSTNNEGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIR 408          
The following BLAST results are available for this feature:
BLAST of FC876424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
KIF2B_MACFA5.007e-1835.80Kinesin-like protein KIF2B OS=Macaca fascicularis ... [more]
KIF2B_HUMAN6.539e-1836.63Kinesin-like protein KIF2B OS=Homo sapiens GN=KIF2... [more]
YOG1_SCHPO7.994e-1629.13Kinesin-like motor protein C15D4.01c OS=Schizosacc... [more]
NOD_DROME8.838e-1533.12Kinesin-like protein Nod OS=Drosophila melanogaste... [more]
KLP8_SCHPO4.539e-1128.05Kinesin-like protein 8 OS=Schizosaccharomyces pomb... [more]

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Properties
Property NameValue
Genbank descriptionC32004F03EF DevOvary1 Citrus clementina cDNA clone C32004F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876424 ID=FC876424; Name=FC876424; organism=Citrus clementina; type=EST; length=673bp
CTCCTAAGAAGTTGGAGATAAAGCAAGCAGCAGAAGGTGGTACCCAAGAA
GTGCCAGGACTCACTGAAGCTCAAGTATATGGTACAGAGGAAGTGTGGGA
GCTACTTAAGTCTGGAGCCAGAGTTAGATCTGTTGGATCCACCAATGCCA
ATGAGCTCAGTAGCCGGTCTCACTGCTTGTTGCGAGTAACTGTGAAGGGG
GAGAATCTGATAAATGGGCAGAAGACTAAGAGTCACCTCTGGCTGGTAGA
CTTGGCAGGCAGTGAACGTGTGGGGAAGATTGAAGTTGATGGTGAGAGGT
TGAAGGAATCTCAGTTTATAAATAAATCTCTCTCTGCACTTGGTGATGTT
ATATCTGCTCTGGCATCTAAATCAGGCCACATTCCGTACAGGAACTCGAA
GCTCACTCATATTTTGCAGAGCTCTCTAGGTGGAGATTGCAAGACTCTGA
TGTTTGTCCAGATCAGCCCAAGTTCTTCAGACCTTGGAGAGACCCCTTGT
TCACTGAATTTTGCCAGCCGAGTTCGGGGAATTGAAAGTGGTCCTGCTCG
GAAACAATCAGACATTTCTGAACTTTTTAAGTACAAGCAAATGGCAGAAA
AGTTAAAGCAGGATGAGAAGGAGACGAAGAAGTTGCAGGACAATTTGCAG
TCTGTACAATTAAGGCTCGCTGC
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