FC876427

Overview
NameFC876427
Unique NameFC876427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 72/223 (32.29%), Postives = 120/223 (53.81%), Query Frame = 3
Query:   27 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQST---LVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMXTLLFIIPSM-KQKGEKLMDWNNAE 683
            +LLG    T F+SM++ N AA +IM+P+   I++   E+    T    + K+ +A+VL + Y+  +GG+ TL GT   +IL G +++ F E   ISF+ W   G P  +V+   +W I   +   +     L    D   ++++L  LG M + EK+VL VF +   LW+TR     +  W   F     DGT ++ +  LLF+IP+  K+K ++++DW  A+
Sbjct:  147 ILLGFMIATGFLSMFVSNTAAVMIMIPIGLAIIKEANELKHGDTKPESISKFEQALVLAIGYAGTIGGLGTLIGTPPLIILKGQYQSAFGE--EISFAKWMIIGVPTVIVLLFLVW-IYIRYIAFKHDMKTLPGGQDL--IRKKLSELGKMKYEEKVVLIVFLLASFLWITREFL--LKHW--TFTSEVADGTIAMFISVLLFLIPAKNKEKHKRIIDWEVAK 360          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: SDCS_STAAR (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MRSA252) GN=sdcS PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 72/225 (32.00%), Postives = 119/225 (52.89%), Query Frame = 3
Query:   27 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYL--DKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMXTLLFIIPSMK-QKGEKLMDWNNAE 683
            +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL GT   +IL G +  +F   + ISF+ W   G P  +V+    W  L  +   R       +YL   +  +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ +  LLFIIP+   +K  +++DW  A+
Sbjct:  148 ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHF--GHEISFAKWMIVGIPTVIVLLGITWLYL-RYVAFRHD----LKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAK 361          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: SDCS_STAAN (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain N315) GN=sdcS PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 72/225 (32.00%), Postives = 119/225 (52.89%), Query Frame = 3
Query:   27 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYL--DKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMXTLLFIIPSMK-QKGEKLMDWNNAE 683
            +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL GT   +IL G +  +F   + ISF+ W   G P  +V+    W  L  +   R       +YL   +  +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ +  LLFIIP+   +K  +++DW  A+
Sbjct:  148 ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHF--GHEISFAKWMIVGIPTVIVLLGITWLYL-RYVAFRHD----LKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAK 361          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: SDCS_STAAM (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sdcS PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 72/225 (32.00%), Postives = 119/225 (52.89%), Query Frame = 3
Query:   27 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYL--DKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMXTLLFIIPSMK-QKGEKLMDWNNAE 683
            +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL GT   +IL G +  +F   + ISF+ W   G P  +V+    W  L  +   R       +YL   +  +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ +  LLFIIP+   +K  +++DW  A+
Sbjct:  148 ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHF--GHEISFAKWMIVGIPTVIVLLGITWLYL-RYVAFRHD----LKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAK 361          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: SDCS_STAAC (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain COL) GN=sdcS PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 72/225 (32.00%), Postives = 119/225 (52.89%), Query Frame = 3
Query:   27 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYL--DKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMXTLLFIIPSMK-QKGEKLMDWNNAE 683
            +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL GT   +IL G +  +F   + ISF+ W   G P  +V+    W  L  +   R       +YL   +  +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ +  LLFIIP+   +K  +++DW  A+
Sbjct:  148 ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHF--GHEISFAKWMIVGIPTVIVLLGITWLYL-RYVAFRHD----LKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAK 361          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: SDCS_STAA8 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain NCTC 8325) GN=sdcS PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 72/225 (32.00%), Postives = 119/225 (52.89%), Query Frame = 3
Query:   27 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYL--DKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMXTLLFIIPSMK-QKGEKLMDWNNAE 683
            +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL GT   +IL G +  +F   + ISF+ W   G P  +V+    W  L  +   R       +YL   +  +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ +  LLFIIP+   +K  +++DW  A+
Sbjct:  148 ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHF--GHEISFAKWMIVGIPTVIVLLGITWLYL-RYVAFRHD----LKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAK 361          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: SDCS_STAAW (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MW2) GN=sdcS PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 71/225 (31.56%), Postives = 119/225 (52.89%), Query Frame = 3
Query:   27 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYL--DKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMXTLLFIIPSMK-QKGEKLMDWNNAE 683
            +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL GT   +IL G +  +F   + ISF+ W   G P  +V+    W  L  +   R       +YL   +  +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ +  LLF+IP+   +K  +++DW  A+
Sbjct:  148 ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHF--GHEISFAKWMIVGIPTVIVLLGITWLYL-RYVAFRHD----LKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFVIPAKNTEKHRRIIDWEVAK 361          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: SDCS_STAAS (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MSSA476) GN=sdcS PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 71/225 (31.56%), Postives = 119/225 (52.89%), Query Frame = 3
Query:   27 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYL--DKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMXTLLFIIPSMK-QKGEKLMDWNNAE 683
            +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL GT   +IL G +  +F   + ISF+ W   G P  +V+    W  L  +   R       +YL   +  +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ +  LLF+IP+   +K  +++DW  A+
Sbjct:  148 ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHF--GHEISFAKWMIVGIPTVIVLLGITWLYL-RYVAFRHD----LKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFVIPAKNTEKHRRIIDWEVAK 361          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: SDCS_STAAB (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sdcS PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 71/225 (31.56%), Postives = 119/225 (52.89%), Query Frame = 3
Query:   27 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYL--DKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMXTLLFIIPSMK-QKGEKLMDWNNAE 683
            +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL GT   +IL G +  +F   + ISF+ W   G P  +V+    W  L  +   R       +YL   +  +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ +  LLF+IP+   +K  +++DW  A+
Sbjct:  148 ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHF--GHEISFAKWMIVGIPTVIVLLGITWLYL-RYVAFRHD----LKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFVIPAKNTEKHRRIIDWEVAK 361          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: SDCS_STAA3 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain USA300) GN=sdcS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 72/225 (32.00%), Postives = 118/225 (52.44%), Query Frame = 3
Query:   27 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYL--DKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMXTLLFIIPSMK-QKGEKLMDWNNAE 683
            +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL GT   +IL G +  +F     ISF+ W   G P  +V+    W  L  +   R       +YL   +  +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ +  LLFIIP+   +K  +++DW  A+
Sbjct:  148 ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHF--GYEISFAKWMIVGIPTVIVLLGITWLYL-RYVAFRHD----LKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAK 361          
The following BLAST results are available for this feature:
BLAST of FC876427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SDCS_STAS15.291e-2432.29Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAR6.910e-2432.00Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAN6.910e-2432.00Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAM6.910e-2432.00Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAC6.910e-2432.00Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA86.910e-2432.00Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAW9.025e-2431.56Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAS9.025e-2431.56Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAB9.025e-2431.56Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA31.539e-2332.00Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionC32004F07EF DevOvary1 Citrus clementina cDNA clone C32004F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876427 ID=FC876427; Name=FC876427; organism=Citrus clementina; type=EST; length=721bp
GTGGAGAGCCAATGAATCCGCCCTTGCTGCTTCTTGGGATATGTGGCACG
ACAGCATTCGTGAGCATGTGGATGCATAACGTGGCAGCAGCAGTGATCAT
GATGCCAGTGGCCACTGGGATCTTACAGAACTTGCCAGAGGTTCCTCTTC
AATCAACCCTTGTTAGGAAGTATTGCAAAGCTGTGGTGCTCGGGGTCATC
TACTCTGCAGCCGTAGGAGGGATGAGCACACTTACTGGAACAGGTGTTAA
TCTAATATTGGTCGGGATGTGGAAGACCTATTTTCCAGAAGCAAACCCGA
TCAGCTTCAGTACCTGGTTCTGTTTTGGGTTCCCTTTGGCTTTAGTGATT
TTCGTTGCTTTGTGGGCTATTTTGTGCTTGTTCTATTGTTCAAGGGGATC
TGGACCTGCTCTCTCCGAGTATTTGGACAAAGCAAATCTCAAGAGAGAGC
TTGACATGTTAGGTCCAATGGCTTTTGCTGAAAAGATGGTACTAGCTGTA
TTTGGGATGCTAATAGCATTGTGGATGACAAGATCAATAACAGATGACAT
TCCAGGTTGGGGAGCACTCTTCAATGACCGTGCTGGTGATGGAACTGCTA
GTGTTGTGATGGNCACATTGTTGTTCATAATTCCGAGCATGAAGCAAAAG
GGAGAAAAATTGATGGATTGGAACAATGCAGAAGCTACCTTGGAACATAT
ATTGCTTTAGGGGCTGGCTTG
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