FC876427

Overview
NameFC876427
Unique NameFC876427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8343 contig Ccv1_Contig8343:496..1216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: NAD1_CAEEL (Sodium-dependent low-affinity dicarboxylate transporter 1 OS=Caenorhabditis elegans GN=nac-1 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 70/272 (25.74%), Postives = 116/272 (42.65%), Query Frame = 3
Query:   18 PPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLV------------------------------------------RKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANP-ISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR-AGDGTASVVMXTLLFIIP----------SMKQKGEKLMDW 671
            P  ++ G  G T F+SMW+ N A   +M+P+   ++  L        LV                                          +K  K ++L V +SA +GG +T+TGT  NL+LVG     FP A+  ++F +W  F FP+     +  W +L L Y       ++   +    L+++ + L   +FAE  V+  F +L+ LW+ R     +PGWG +F D    D T+++ +  LLF +P            ++    L+DW
Sbjct:  127 PARVMAGFMGVTGFLSMWISNTATTALMVPILQSVITELVSNHRMEDLVALCEAHHNSSRKHSVGMRRLSLPNENNEIKREEMDTAMSPREQKMAKGLMLSVCFSANIGGAATITGTASNLVLVGQLNELFPGADTGVNFLSWLIFAFPMVFCCLIYCWCVLYLLYLRDAPKGSI---IVTRKLQQKYNELHAFSFAEMAVIFCFALLLVLWILRE-PQVVPGWGEMFKDEFVSDATSAMFIVILLFTLPEKLPSSRGSSEQRKASSGLLDW 394          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: NAD3_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 3 OS=Caenorhabditis elegans GN=nac-3 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 73/247 (29.55%), Postives = 121/247 (48.99%), Query Frame = 3
Query:   18 PPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL----PEVPLQSTLVRKYCK----AVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEAN-PISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRA-GDGTASVVMXTLLFIIPS-------------MKQKGEKLMDWNNAEAT 689
            P  ++LG    TA +S ++ N A   +M+P+   ++Q L       P      R  CK     +VL + ++A +GG  T TGT  NL+++G     FP+ +  +++ TW  F +PL L+     W  L  F+      P   E + +  LK   + L  M +AEK V   F +L++LW+ R+    +PG+G  F   A  D T+++++  LLF++PS             +K++G  LMDW   + T
Sbjct:  160 PKWIMLGFMTVTALLSSFISNTATTAMMVPIGQSVVQQLISSFQHHPTNGERGRLGCKKMATGLVLSICFAANIGGTGTATGTPSNLVMLGQLSALFPKVDGSLNYVTWIFFAYPLMLLCLFVAWMTLVSFFLR--DAPEKDEAVTEM-LKTRYNELPRMTYAEKSVFVCFCILLSLWVFRN-PGVVPGFGVFFKKGAYTDATSAMIVAFLLFVLPSERPDLATYIKKEDLKKRG-CLMDWKTMQET 401          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: S13A5_MOUSE (Solute carrier family 13 member 5 OS=Mus musculus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 76/261 (29.12%), Postives = 118/261 (45.21%), Query Frame = 3
Query:   18 PPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL----------------------PEVPLQSTL-------------VRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPI-SFSTWFCFGFPLALVIFVALWAILCLFYCSR---------GSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALF-----NDRAGDGTASVVMXTLLFIIPSMKQK 650
            P  L+LG    TAF+SMW+ N AA  +M+P+   +LQ +                       E+P    +              +   KA+ L V YSA++GG +TLTGTG N++L+G  +  FP++  + ++++WF F FP  +++ V  W  L   Y            G     +E +    L  E   LG +++ E  VL  F +L+ LW +R     +PGW +            D T ++ +  LLFIIPS K K
Sbjct:  121 PSRLMLGFMFVTAFLSMWISNTAATAMMIPIVEAMLQQMIAANTAVEASLGTLELLDKNKTSELPGSQVVFEDPNVQEQEDEETKNMYKAMHLCVCYSASIGGTATLTGTGPNVVLLGQMQELFPDSKDVLNYASWFGFAFPNMVMMLVLAWLWLQCLYMRHNLKKTCICCGEKKRDTEKIAYKVLNEEYQKLGSLSYPECNVLFCFTLLVILWFSRD-PGFMPGWLSFAWVEGNTVHITDATVAIFVAILLFIIPSQKPK 380          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: S13A1_MOUSE (Solute carrier family 13 member 1 OS=Mus musculus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 56/167 (33.53%), Postives = 88/167 (52.69%), Query Frame = 3
Query:  174 CKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYC-------SRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAG---DGTASVVMXTLLFIIPSMK 644
            CK + L V YS+ +GG++T+TGT  NLI    + T +P+   ++F +WF F FP+AL++ +  W  L   Y          G    L E      +K+E + LGPM + E + L +F ++  LW +R     + GW  LF++  G   D T ++V   L F+IP+ K
Sbjct:  237 CKLMCLSVAYSSTIGGLTTITGTSTNLIFSEHFNTRYPDCRCLNFGSWFLFSFPVALILLLLSWIWLQWLYLGFDFKMFKCGKTKTLKEKACAKVIKQEYEKLGPMRYQEIVTLVIFIVMALLWFSRD-PGFVTGWSVLFSEYPGYVTDSTVALVAGILFFLIPAKK 402          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 65/208 (31.25%), Postives = 103/208 (49.52%), Query Frame = 3
Query:  126 QNLPEVPLQSTLVRKY--------CKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFY--CSRGSGPALS-------EYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRA--GDGTASVVMXTLLFIIPSMKQKGEKLMDWNNAEATL 692
            Q L   P +  L RKY        CK + L + YSA +GG++T+ GT  +LI +  +   +P A  ++F TWF F FP++L++ V  W  +   +  C+     +LS       E L +  ++ E + LG +++ E +    F ++  LW TR     +PGW + F  +    D T SV +  LLF+IP+ K    K  D  N E +L
Sbjct:  241 QVLTPSPRKQKLNRKYRSHHDQMICKCLSLSISYSATIGGLTTIIGTSTSLIFLEHFNNQYPAAEVVNFGTWFLFSFPISLIMLVVSWFWMHWLFLGCNFKETCSLSKKKKTKREQLSEKRIQEEYEKLGDISYPEMVTGFFFILMTVLWFTRE-PGFVPGWDSFFEKKGYRTDATVSVFLGFLLFLIPAKKPCFGKKNDGENQEHSL 447          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: S13A1_RAT (Solute carrier family 13 member 1 OS=Rattus norvegicus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 3
Query:  174 CKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILC----------LFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAG---DGTASVVMXTLLFIIPSMK 644
            CK + L + YS+ +GG++T+TGT  NLI    + T +P+   ++F +WF F FP+A+++ +  W  L           +F C  G    L E      +K+E + LGPM + E + L +F ++  LW +R     + GW  LF++  G   D T ++V   L F+IP+ K
Sbjct:  237 CKLMCLCIAYSSTIGGLTTITGTSTNLIFSEHFNTRYPDCRCLNFGSWFLFSFPVAVILLLLSWIWLQWLFLGFNFKEMFKC--GKTKTLKEKACAEVIKQEYEKLGPMRYQEIVTLVIFIVMALLWFSRD-PGFVTGWSVLFSEYPGYVTDSTVALVAGILFFLIPAKK 403          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: S13A1_HUMAN (Solute carrier family 13 member 1 OS=Homo sapiens GN=SLC13A1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 76/287 (26.48%), Postives = 121/287 (42.16%), Query Frame = 3
Query:   12 MNPPLLLLGICGTTAFVSMWMHN---------VAAAVIMM-------------------------------------------PVA-----TGILQNLPEVPLQSTLVRKYC--------KAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILC----------LFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAG---DGTASVVMXTLLFIIPS 638
            +NP  L LG   +TAF+SMW+ N         +A AV+                                             PV      TG + +  E+   S +  KY         K   L + YS+ +GG++T+TGT  NLI    + T +P+   ++F +WF F FP AL+I +  W  L           +F C  G    + +      +K+E   LGP+ + E + L +F ++  LW +R     +PGW ALF++  G   D T ++++  L F+IP+
Sbjct:  118 VNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIAEAVVQQIINAEAEVEATQMTYFNGSTNHGLEIDESVNGHEINERKEKTKPVPGYNNDTGKISSKVELEKNSGMRTKYRTKKGHVTRKLTCLCIAYSSTIGGLTTITGTSTNLIFAEYFNTRYPDCRCLNFGSWFTFSFPAALIILLLSWIWLQWLFLGFNFKEMFKC--GKTKTVQQKACAEVIKQEYQKLGPIRYQEIVTLVLFIIMALLWFSRD-PGFVPGWSALFSEYPGFATDSTVALLIGLLFFLIPA 401          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: YKG6_CAEEL (Uncharacterized transporter B0285.6 OS=Caenorhabditis elegans GN=B0285.6 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 73/277 (26.35%), Postives = 115/277 (41.52%), Query Frame = 3
Query:   18 PPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL------------------------PEVPLQSTLV--------RKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFP-EANPISFSTWFCFGFPLALVIFVALWAILCLFY------CSRGSGPALSEYLDKANLKREL----DMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALF-NDRAGDGTASVVMXTLLFIIPSMKQ--------------KGEKLMDWN 674
            P  L+ G    T+F+S+W+ + A   +M P+A  +L+ +                        PE   +  L         R  CK ++L V +++ +GG  T+  TG NLI     +  FP E + IS+ +W  F  P  +    + W I+ L +            P  +E  ++   KR +    D LGPM +AEK  L +F + +  W++ S    IPGW  LF      D  + +V   LLFI P  K               + E L+DW+
Sbjct:  125 PHWLMAGFMIITSFISLWISDTACCALMAPIAYALLEEIMIPKMRPEEKENEIEVMKIFDKEDPEEKEKKKLDTSRLSVRDRGICKCMMLLVAHASLIGGTGTINSTGPNLIFRDNIEKNFPNEDHGISYLSWMAFAIPPMIFYMFSSWFIVQLQFLGPRHLMGMFREPTETEKQEEEVAKRAVWKSYDQLGPMTWAEKSTLVIFVLAVLSWVS-SDPKVIPGWSDLFRKGYVTDSCSGLVAVFLLFIWPKKKPDFRIFRKDKSRPSVRQEPLIDWD 400          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: NAD2_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 2 OS=Caenorhabditis elegans GN=nac-2 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 60/244 (24.59%), Postives = 109/244 (44.67%), Query Frame = 3
Query:   21 PLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEV--------------PLQSTLVRK------------YCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEAN-PISFSTWFCFGFPLALVIFVALWAILCLFYCSRGS------GPALSE----YLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR--AGDGTASVVMXTLLFIIP 635
            P++LLG    T+F+S ++ + A   +M P A  +L ++ +               P  +T+  K            +CKA++L   +++ +GG + +T TG NL+        +PE    +++  W  F  P   V  +A + IL  ++    +       P+  E     L + N++   + LG +++ EK V   F +LI  W++R      PGWG L   R    D  + V++  +LF+ P
Sbjct:  118 PVMLLGFMCITSFISFFVSDTACTALMCPTAVALLMSMSDAVQHLKEDHRKPKPPPDDATVAEKLRIDDMTPQDAGFCKALILACAHASLIGGTAIITSTGPNLVFRENIHKRYPEGQVTMTYLQWMVFAIPPMFVYLLASYIILVCYFMGPSTFARWFERPSKEEAHLKKLIEKNIQTMYEDLGDVSWGEKSVFVFFILLIGSWISRD-PGFTPGWGDLLPHRNFISDSVSGVLISCILFVWP 360          
BLAST of FC876427 vs. ExPASy Swiss-Prot
Match: INDY2_DROME (Protein I'm not dead yet 2 OS=Drosophila melanogaster GN=Indy-2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 60/237 (25.32%), Postives = 110/237 (46.41%), Query Frame = 3
Query:   15 NPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLP------------EVPLQS---TLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEAN-PISFSTWFCFGFPLALVIFVALWAI------LCLFYCSRGSGPALSE------YLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR-AGDGTASVVMXTLLFIIPS 638
            +P  L +G+   + F+ +W+ N A   +M P+   ++  L             E P++        K   A   G+ Y++++GG+ TL GTG NL+  G++   FP +   I+F+ +  +  PL +++ V L  I      + LF  +  +G  ++E       ++    +R +D LGPM+  E  +   F  +I L +TR     +PGW  L N +  G  +    +  L+F +P+
Sbjct:  131 SPRRLFVGLMSVSTFMGLWISNSAGTAMMCPIVKALVNELDTNKIFPVYMTQEEEPVEEGEPPHPSKITVAFYAGIAYASSIGGLGTLIGTGTNLVFRGIYTERFPTSTVEITFANFMFYSIPLMVIVNVTLVIIAFLITHMGLFRPNSKTGKIIAEANTNRKLMEDVLRQRHID-LGPMSCHEIQMAIAFAFMIVLLITRK-PGFVPGWSDLINRKVVGSASGLSFIVLLIFALPT 365          
The following BLAST results are available for this feature:
BLAST of FC876427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
NAD1_CAEEL2.626e-2325.74Sodium-dependent low-affinity dicarboxylate transp... [more]
NAD3_CAEEL7.640e-2329.55Sodium-dependent high-affinity dicarboxylate trans... [more]
S13A5_MOUSE1.702e-2229.12Solute carrier family 13 member 5 OS=Mus musculus ... [more]
S13A1_MOUSE6.468e-2233.53Solute carrier family 13 member 1 OS=Mus musculus ... [more]
S13A4_HUMAN1.882e-2131.25Solute carrier family 13 member 4 OS=Homo sapiens ... [more]
S13A1_RAT7.151e-2132.35Solute carrier family 13 member 1 OS=Rattus norveg... [more]
S13A1_HUMAN4.635e-2026.48Solute carrier family 13 member 1 OS=Homo sapiens ... [more]
YKG6_CAEEL9.046e-1626.35Uncharacterized transporter B0285.6 OS=Caenorhabdi... [more]
NAD2_CAEEL3.437e-1524.59Sodium-dependent high-affinity dicarboxylate trans... [more]
INDY2_DROME4.489e-1525.32Protein I'm not dead yet 2 OS=Drosophila melanogas... [more]

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Properties
Property NameValue
Genbank descriptionC32004F07EF DevOvary1 Citrus clementina cDNA clone C32004F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876427 ID=FC876427; Name=FC876427; organism=Citrus clementina; type=EST; length=721bp
GTGGAGAGCCAATGAATCCGCCCTTGCTGCTTCTTGGGATATGTGGCACG
ACAGCATTCGTGAGCATGTGGATGCATAACGTGGCAGCAGCAGTGATCAT
GATGCCAGTGGCCACTGGGATCTTACAGAACTTGCCAGAGGTTCCTCTTC
AATCAACCCTTGTTAGGAAGTATTGCAAAGCTGTGGTGCTCGGGGTCATC
TACTCTGCAGCCGTAGGAGGGATGAGCACACTTACTGGAACAGGTGTTAA
TCTAATATTGGTCGGGATGTGGAAGACCTATTTTCCAGAAGCAAACCCGA
TCAGCTTCAGTACCTGGTTCTGTTTTGGGTTCCCTTTGGCTTTAGTGATT
TTCGTTGCTTTGTGGGCTATTTTGTGCTTGTTCTATTGTTCAAGGGGATC
TGGACCTGCTCTCTCCGAGTATTTGGACAAAGCAAATCTCAAGAGAGAGC
TTGACATGTTAGGTCCAATGGCTTTTGCTGAAAAGATGGTACTAGCTGTA
TTTGGGATGCTAATAGCATTGTGGATGACAAGATCAATAACAGATGACAT
TCCAGGTTGGGGAGCACTCTTCAATGACCGTGCTGGTGATGGAACTGCTA
GTGTTGTGATGGNCACATTGTTGTTCATAATTCCGAGCATGAAGCAAAAG
GGAGAAAAATTGATGGATTGGAACAATGCAGAAGCTACCTTGGAACATAT
ATTGCTTTAGGGGCTGGCTTG
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