FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_HAHCH (3-ketoacyl-CoA thiolase OS=Hahella chejuensis (strain KCTC 2396) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 52/191 (27.23%), Postives = 94/191 (49.21%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VV++   R+ + +AK G F++  A+ L A ++ A+ ++  +++P+EV D++ G V           R  +     P T   +TVNR C S + A+   A AI  G  D+ +  G+E M    ++     NP    ++     +  MG+T+E +A+  G++RQ+QD                G+F++EII +
Sbjct:    8 VVVIDCVRSPMGRAKAGCFRNVRAETLSATLIDALFDRNDKVDPAEVEDLIWGCVNQTLEQGFNVARQISLLTRIPHTSSAQTVNRLCGSAMSAIHTAAQAIMTGNGDVFVVGGVEHMGHVPMTQGFDHNPAASKYSAKASNM--MGLTAEMLAKMHGISRQQQDEFGARSHRLAHEATLEGRFRNEIISI 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ECOUT (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain UTI89 / UPEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 64/221 (28.96%), Postives = 100/221 (45.25%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTTEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ECOL6 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 64/221 (28.96%), Postives = 100/221 (45.25%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ECOL5 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 64/221 (28.96%), Postives = 100/221 (45.25%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ECOK1 (3-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 / APEC GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 64/221 (28.96%), Postives = 100/221 (45.25%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ECO57 (3-ketoacyl-CoA thiolase OS=Escherichia coli O157:H7 GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 64/221 (28.96%), Postives = 100/221 (45.25%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_MYCTU (Probable acetyl-CoA acetyltransferase OS=Mycobacterium tuberculosis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.797e-14
Identity = 69/206 (33.50%), Postives = 93/206 (45.15%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT------VNSISVVGQVNPKV----------EIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            +IVA  RT I K   G  KD  A +L A  +K  +EK  +  S V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SG+ A+A     I+A  +D+ +A G ESMT      +NS S     +  V          ++FT       PMG  +E        TR EQD                G F DE+IPVN
Sbjct:    1 MIVAGARTPIGKLM-GSLKDFSASELGAIAIKGALEKANVPASLVEYVIMGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGIDAIALADQLIRAREFDVVVAGGQESMTKAPHLLMNSRSGYKYGDVTVLDHMAYDGLHDVFTDQ-----PMGALTEQRNDVDMFTRSEQDEYAAASHQKAAAAWKDGVFADEVIPVN 199          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_MYCBO (Probable acetyl-CoA acetyltransferase OS=Mycobacterium bovis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.797e-14
Identity = 69/206 (33.50%), Postives = 93/206 (45.15%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT------VNSISVVGQVNPKV----------EIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            +IVA  RT I K   G  KD  A +L A  +K  +EK  +  S V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SG+ A+A     I+A  +D+ +A G ESMT      +NS S     +  V          ++FT       PMG  +E        TR EQD                G F DE+IPVN
Sbjct:    1 MIVAGARTPIGKLM-GSLKDFSASELGAIAIKGALEKANVPASLVEYVIMGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGIDAIALADQLIRAREFDVVVAGGQESMTKAPHLLMNSRSGYKYGDVTVLDHMAYDGLHDVFTDQ-----PMGALTEQRNDVDMFTRSEQDEYAAASHQKAAAAWKDGVFADEVIPVN 199          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: PCAF_PSEAE (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aeruginosa GN=pcaF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.797e-14
Identity = 65/210 (30.95%), Postives = 100/210 (47.62%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVN------PKVEIFT----------QARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK 580
            V I  A RT I +   G      ADDL A  LKA++E+   ++ S + ++ +G     G       RMA   AG PE+VP  T+NR C+SG+ A+     AI  G  ++ IA G+ESM+  +  V+G+ +       K+E  T          + +  + PM  T++NVA  + V+R +QD                G F +EI+PV  +
Sbjct:    5 VFICDAVRTPIGRFG-GSLSAVRADDLAAVPLKALVERNPGVDWSALDEVFLGCANQAGEDNRNVARMALLLAGLPESVPGVTLNRLCASGMDAIGTAFRAIACGEMELAIAGGVESMS-RAPYVMGKADSAFGRGQKIEDTTIGWRFVNPLMKEQYGIDPMPQTADNVADDYRVSRADQDAFALRSQQRAGRAQEAGFFAEEIVPVTIR 212          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIC_RAT (Acetyl-CoA acetyltransferase, cytosolic OS=Rattus norvegicus GN=Acat2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 64/201 (31.84%), Postives = 98/201 (48.76%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-------VNSISVVGQVNPKVEIFTQA-RDCL--LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VVI++A RTAI  +  G        +L   V+K V+++ ++ P EV +++ G VL  G  +    R A+  AG P +VP  +    C SGL+AV   A +I  G   I +A G+E+M+       + S   +G+V     I      D      MGIT+ENVA+++ V+R+ QD                G F  EI+PV+
Sbjct:    8 VVIISAARTAI-GSFNGALSTVPVHNLGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQN-PTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGMENMSKAPHLAHLRSGVKMGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDKVAVVSQNRAEHAQKAGHFDKEIVPVH 206          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
FADA_HAHCH1.376e-1427.233-ketoacyl-CoA thiolase OS=Hahella chejuensis (str... [more]
FADA_ECOUT1.376e-1428.963-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADA_ECOL61.376e-1428.963-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=... [more]
FADA_ECOL51.376e-1428.963-ketoacyl-CoA thiolase OS=Escherichia coli O6:K15... [more]
FADA_ECOK11.376e-1428.963-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 ... [more]
FADA_ECO571.376e-1428.963-ketoacyl-CoA thiolase OS=Escherichia coli O157:H... [more]
THIL_MYCTU1.797e-1433.50Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIL_MYCBO1.797e-1433.50Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
PCAF_PSEAE1.797e-1430.95Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aerugi... [more]
THIC_RAT2.347e-1431.84Acetyl-CoA acetyltransferase, cytosolic OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
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