FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLX (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli GN=paaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 58/194 (29.90%), Postives = 87/194 (44.85%), Query Frame = 2
Query:   50 GGFKDTLADDLLA-PVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLL----------------PMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK 580
            G      ADDL A P+ + ++   RL+   + D+++G     G       RMA   AG P++V   T+NR C SGL A+   A AIKAG  D+ IA G+ESM+  +  V+G+         +  D  +                 M  T+ENVA+   ++R++QD                G   +EI+PV  K
Sbjct:   19 GALSGVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS-RAPFVMGKATSAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEIVPVVLK 211          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SALCH (3-ketoacyl-CoA thiolase OS=Salmonella choleraesuis GN=fadA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 63/221 (28.51%), Postives = 100/221 (45.25%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G   + +  G+E M    +S     +P +            MG+T+E +++  G++R+ QD                G FK EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNERAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PECCP (3-ketoacyl-CoA thiolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 59/190 (31.05%), Postives = 92/190 (48.42%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIP 568
            VVIV A RT + ++K G F+   A+DL A ++++++ +   L+  E+ DI  G V           R AA  A  P  VP  TVNR C S +QA+ D A  I  G  D+ +  G+E M    ++     +P +   T A+   + MG+T+E + +   ++R+ QD                G F+ EIIP
Sbjct:    4 VVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNAALDAREIDDIYWGCVQQTLEQGFNVARNAALLAEIPMNVPATTVNRLCGSSMQALHDAARTIMVGDADVCLIGGVEHMGHVPMNHGVDFHPGLS-RTIAKAAGM-MGLTAEMLGRMHNISREMQDQFAARSHQRAHHATQSGAFRHEIIP 191          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_BOVIN (Acetyl-CoA acetyltransferase, mitochondrial OS=Bos taurus GN=ACAT1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 60/204 (29.41%), Postives = 96/204 (47.06%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT----VNSISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKI 583
            VVIV+A RT I  +  G      A  L +  ++  IEK  +   EV +  +G VL  G  +A   R A   AG P + P  T+N+ C+SG++A+   +  +  G  D+ +A G+ESM+    V +         K+E     +D L      + MG  +EN A++  +TR+EQD                G+F +E++PV   +
Sbjct:   37 VVIVSAIRTPI-GSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQA-PTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPYVMNRGATPYGGVKLEDLI-VKDGLTDVYNKIHMGNCAENTAKKLNITREEQDTYALNSYTRSKAAWEAGRFGNEVVPVTITV 237          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLI (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (strain K12) GN=paaJ PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 58/194 (29.90%), Postives = 87/194 (44.85%), Query Frame = 2
Query:   50 GGFKDTLADDLLA-PVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLL----------------PMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK 580
            G      ADDL A P+ + ++   RL+   + D+++G     G       RMA   AG P++V   T+NR C SGL A+   A AIKAG  D+ IA G+ESM+  +  V+G+         +  D  +                 M  T+ENVA+   ++R++QD                G   +EI+PV  K
Sbjct:   19 GALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS-RAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEIVPVVLK 211          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHIDS (3-ketoacyl-CoA thiolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 63/221 (28.51%), Postives = 99/221 (44.80%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                  FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ECOLI (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain K12) GN=fadA PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 63/221 (28.51%), Postives = 99/221 (44.80%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                  FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ECOHS (3-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 (strain HS) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 63/221 (28.51%), Postives = 99/221 (44.80%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                  FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 54/194 (27.84%), Postives = 95/194 (48.97%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSE----VGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV A RT + K++ G F+   A+ L A +++A++ +   NP+       D++ G V           R  +  AG P T   +TVNR C S +QA+   + +I  G  D+ +  G+E M   ++     +NP++   T     +  MG+T+E + +  G+TR++QD                G++ +EI+P+
Sbjct:    8 VVIVDAVRTPMGKSRNGQFRHVRAEKLSAQLIQALMAR---NPNWDIQLTEDVIWGCVNQTKEQGMNIARNISMLAGLPRTSAAQTVNRLCGSSMQALHSASQSIMTGNGDVFVIGGVEHMGHVAMDHGIDLNPEMSKVTAKASNM--MGLTAEMLGKMHGITREQQDAFGVRSHKLAWEATQQGRWDNEIVPI 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THL_BACSU (Acetyl-CoA acetyltransferase OS=Bacillus subtilis GN=mmgA PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 64/202 (31.68%), Postives = 102/202 (50.50%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISV-VGQVNPKVEIFTQARDCLLPMGIT-----------SENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VIV+A RT   K   G  K+  A +L   V+K  +++  ++  +V   V+G V+  GS + +  R AA  AG P +VP  T+N+ C+SGL+AV      I+A   DI +A G+ESM+    +V  G+   ++    + RD ++  G+T               A+ + ++R+EQD                GKF+DEI+PVN
Sbjct:    5 VIVSAARTPFGKFG-GVLKEVKAAELGGIVMKEALQQAGVSGDDVEGNVMGMVVQAGSGQ-IPSRQAARLAGMPWSVPSETLNKVCASGLRAVTLCDQMIRAQDADILVAGGMESMSNIPYAVPAGRWGARMG-DGELRDLMVYDGLTCAFDEVHMAVHGNTAAKEYAISRREQDEWALRSHARAAKAADEGKFQDEIVPVN 203          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PAAJ_ECOLX5.230e-1429.90Beta-ketoadipyl-CoA thiolase OS=Escherichia coli G... [more]
FADA_SALCH5.230e-1428.513-ketoacyl-CoA thiolase OS=Salmonella choleraesuis... [more]
FADA_PECCP5.230e-1431.053-ketoacyl-CoA thiolase OS=Pectobacterium carotovo... [more]
THIL_BOVIN6.830e-1429.41Acetyl-CoA acetyltransferase, mitochondrial OS=Bos... [more]
PAAJ_ECOLI6.830e-1429.90Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (... [more]
FADA_SHIDS6.830e-1428.513-ketoacyl-CoA thiolase OS=Shigella dysenteriae se... [more]
FADA_ECOLI6.830e-1428.513-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADA_ECOHS6.830e-1428.513-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 ... [more]
FADA_ALCBS6.830e-1427.843-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
THL_BACSU8.920e-1431.68Acetyl-CoA acetyltransferase OS=Bacillus subtilis ... [more]

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Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
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