FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 54/187 (28.88%), Postives = 89/187 (47.59%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAV-IEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEI 562
            VIV   RT + ++K G F++  A+ L A ++KA+ +   +L+P+++ D++ G V           R A+  AG P+T    TVNR C S + A+   A AI  G  D  I  G+E M    + +   V+    +  +       MG+T+E + +  G+TR++QD                G+F  EI
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKALMVRNPQLDPNDIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDALHQAARAIMTGQGDTFIIGGVEHM--GHVPMNHGVDFHPGLANRVAKASGMMGLTAEMLGKMHGITREQQDAFAVRSHQRAHAATIEGRFAKEI 189          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_COLP3 (3-ketoacyl-CoA thiolase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 51/189 (26.98%), Postives = 95/189 (50.26%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEII 565
            VVIV   RT + ++K G F++  A+ L A ++K ++ +   LNP ++ D++ G V           R A+  AG P+++   TVNR C S ++A+   +T+I +G  D+ +  G+E M    + ++  V+    +          MG+T+E + ++ G+TR+ QD                G++ +EI+
Sbjct:    4 VVIVDCIRTPMGRSKAGVFRNVRAEALSAHLMKQILVRNPALNPEDIEDVIWGCVKQTKEQGFNIARNASLLAGLPKSIGGVTVNRLCGSSMEALHQASTSIMSGQGDVFLIGGVEHM--GHVPMMYDVDFDPALNKNIALASGNMGLTAELLGKQHGITREMQDAFGARSHQKAHEAHLAGRWDNEIV 190          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_MACFA (Acetyl-CoA acetyltransferase, mitochondrial OS=Macaca fascicularis GN=ACAT1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 62/208 (29.81%), Postives = 97/208 (46.63%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLA----DDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT----VNSISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKI 583
            VVIV+A RT I     G F  +L+      L +  ++  IEK  +   EV +  +G VL  G  +A   R A   AG P + P  T+N+ C+SG++A+   + ++  G  D+ +A G+ESM+    V +         K+E     +D L      + MG  +EN A++  + R EQD                GKF +E+IPV   +
Sbjct:   42 VVIVSATRTPI-----GSFLGSLSLLPTTKLGSIAMQGAIEKAGIPKEEVKEAYMGNVLQGGEGQA-PARQAVLGAGLPISTPRTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLI-VKDGLTDVYNKIHMGSCAENTAKKLNIARDEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTV 242          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIC1_ARATH (Acetyl-CoA acetyltransferase, cytosolic 1 OS=Arabidopsis thaliana GN=AAT1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 62/219 (28.31%), Postives = 103/219 (47.03%), Query Frame = 2
Query:   32 ICKAKRGGFKDTL----ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNP--------------KVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN--------TKIVDPKTGVEK 610
            + +   GGF  +L    A  L +  + A +++  ++P+ V ++V G VL+    +A   R AA  AG P +V   TVN+ C+SG++AV   A +I+ G+ D+ +A G+ESM+ N+   + +                 K  ++    DC   MG  +E  A++F +TR++QD                G F  EI+PV         + IVD   G+ K
Sbjct:   18 VARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFGNVLSANLGQA-PARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVVAGGMESMS-NTPKYLAEARKGSRFGHDSLVDGMLKDGLWDVYNDC--GMGSCAELCAEKFQITREQQDDYAVQSFERGIAAQEAGAFTWEIVPVEVSGGRGRPSTIVDKDEGLGK 232          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIM_RAT (3-ketoacyl-CoA thiolase, mitochondrial OS=Rattus norvegicus GN=Acaa2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 56/204 (27.45%), Postives = 88/204 (43.14%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-QVNPKVEIFTQARDCL----------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK 580
            V IVAA RT    A  G  KD  A DL     +A +   ++ P  +  ++VG V+   S  A   R      G P      T+NR C SG Q++      I +   ++ +  G ESM+ +  SV   +   K  +  +  D L          LPMG+T+EN+A ++ ++R++ D                G F +E+ P+  K
Sbjct:    7 VFIVAAKRTPF-GAYGGLLKDFTATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSPYSVRNVRFGTKFGLDLKLEDTLWAGLTDQHVKLPMGMTAENLAAKYNISREDCDRYALQSQQRWKAANEAGYFNEEMAPIEVK 209          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 53/187 (28.34%), Postives = 89/187 (47.59%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEI 562
            VIV   RT + ++K G F++  A+ L A ++K ++ +  +L+P+ + D++ G V           R A+  AG P+T    TVNR C S ++A+   A AI  G+ D  I  G+E M    + +   V+    +          MG+T+E + +  G+TR++QD                G+F  EI
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHM--GHVPMNHGVDFHPGLANNVAKASGMMGLTAEMLGKLHGITREQQDAFAVRSHQRAHAATVEGRFAKEI 189          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHESA (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ANA-3) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 53/187 (28.34%), Postives = 89/187 (47.59%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEI 562
            VIV   RT + ++K G F++  A+ L A ++K ++ +  +L+P+ + D++ G V           R A+  AG P+T    TVNR C S ++A+   A AI  G+ D  I  G+E M    + +   V+    +          MG+T+E + +  G+TR++QD                G+F  EI
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHM--GHVPMNHGVDFHPGLANNVAKASGMMGLTAEMLGKLHGITREQQDAFAVRSHQRAHAATVEGRFAKEI 189          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 53/187 (28.34%), Postives = 89/187 (47.59%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEI 562
            VIV   RT + ++K G F++  A+ L A ++K ++ +  +L+P+ + D++ G V           R A+  AG P+T    TVNR C S ++A+   A AI  G+ D  I  G+E M    + +   V+    +          MG+T+E + +  G+TR++QD                G+F  EI
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHM--GHVPMNHGVDFHPGLANNVAKASGMMGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKEI 189          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_DANRE (Acetyl-CoA acetyltransferase, mitochondrial OS=Danio rerio GN=acat1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.427e-13
Identity = 57/206 (27.67%), Postives = 97/206 (47.09%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTL----ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGIT-----------SENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VVIV+A RT I     G FK +L    A  L +  +K  I+K  +   EV ++ +G VL  G  +A   R A   AG P + P  T+N+ C+SG++++   + ++  G  D+ +A G+ESM+     +  +  P   +  +  D ++  G+T           +EN A+   ++R+EQD                G    E++PV+
Sbjct:   35 VVIVSAVRTPI-----GSFKGSLSTLPATKLGSIAIKGAIDKAGIPVEEVKEVYMGNVLQAGEGQA-PTRQALLGAGLPLSTPATTINKVCASGMKSIMLASQSLMCGHQDVMVAGGMESMSQVPYIMAREAPPYGGV--KMEDLIVKDGLTDVYNKFHMGNCAENTAKNSSISREEQDAFAIKSYTLSKAAWESGILAKEVVPVS 232          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: YHFS_BACSU (Putative acetyl-CoA C-acetyltransferase yhfS OS=Bacillus subtilis GN=yhfS PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.782e-13
Identity = 57/189 (30.16%), Postives = 91/189 (48.15%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCL--LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEII 565
            VIV A RT I   + G  K  L +DL AP+++ +  K      +V ++++G     G   A   R++A  AG P +VP  T++RQC SGL+AV    + I+AG   + IA G ES + +  S   + +P         D +    MGI +E  A R+ ++R  QD                G +++E++
Sbjct:    4 VIVDAKRT-IFGNQNGLLKPFLPEDLAAPIIRCLSRKLE---DQVDEVILGNATGRGGNLA---RLSALQAGLPLSVPGMTIDRQCGSGLEAVRYACSLIQAGAGTMYIAGGSESSSQSPFSERARFSP---------DAIGDPDMGIAAEYTAARYSISRSMQDEYALLSHQRSRNAHDEGFYREEVV 176          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
FADA_SHEFN1.987e-1328.883-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADA_COLP31.987e-1326.983-ketoacyl-CoA thiolase OS=Colwellia psychrerythra... [more]
THIL_MACFA2.595e-1329.81Acetyl-CoA acetyltransferase, mitochondrial OS=Mac... [more]
THIC1_ARATH2.595e-1328.31Acetyl-CoA acetyltransferase, cytosolic 1 OS=Arabi... [more]
THIM_RAT3.390e-1327.453-ketoacyl-CoA thiolase, mitochondrial OS=Rattus n... [more]
FADA_SHESM3.390e-1328.343-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHESA3.390e-1328.343-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHEON3.390e-1328.343-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
THIL_DANRE4.427e-1327.67Acetyl-CoA acetyltransferase, mitochondrial OS=Dan... [more]
YHFS_BACSU5.782e-1330.16Putative acetyl-CoA C-acetyltransferase yhfS OS=Ba... [more]

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Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
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