FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VV+V   RT + +AK G F++  A+ L A +++A+ E+  +L+P EV D++ G V           R  +     P     +TVNR C S + A+   A AI+ G  D+ +  G+E M    ++     NP    ++     +  MG+T+E +A+  G+TR++QD                G+FK+EI+P+
Sbjct:    8 VVVVDCVRTPMGRAKNGCFRNVRAETLSAALIEALFERNPKLDPKEVEDVIWGCVNQTKEQGFNVARQISLLTRIPHESAAQTVNRLCGSAMSAIHTAAQAIQTGNGDVFLVGGVEHMGHVPMTEGFDHNPAASKYSAKASNM--MGLTAEMLAKMHGITREQQDEFGARSHRLAHEATQEGRFKNEIVPI 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.054e-17
Identity = 72/205 (35.12%), Postives = 98/205 (47.80%), Query Frame = 2
Query:    8 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQV------NPKVEIFTQARDCLLP----------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            IV A RT   +   GG     ADDL A  + A+IE+   +N ++V D++ G     G       RM+A  AG P  VP  TVNR C S L A+A  A AIKAG   + IA G+ESM+  +  V+G+         K+E  T     + P          M  T+ENVA++FG+ R++QD                G F  EI+PV
Sbjct:    6 IVDAIRTPFGRYA-GGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMS-RAPYVMGKSEGAFGRTQKIEDTTMGWRFINPKLKAMYGVDTMPQTAENVAEQFGIQREDQDQFAYTSQQRTAAAQAKGYFAKEIVPV 208          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.054e-17
Identity = 72/205 (35.12%), Postives = 98/205 (47.80%), Query Frame = 2
Query:    8 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQV------NPKVEIFTQARDCLLP----------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            IV A RT   +   GG     ADDL A  + A+IE+   +N ++V D++ G     G       RM+A  AG P  VP  TVNR C S L A+A  A AIKAG   + IA G+ESM+  +  V+G+         K+E  T     + P          M  T+ENVA++FG+ R++QD                G F  EI+PV
Sbjct:    6 IVDAIRTPFGRYA-GGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMS-RAPYVMGKSEGAFGRTQKIEDTTMGWRFINPKLKAMYGVDTMPQTAENVAEQFGIQREDQDQFAYTSQQRTAAAQAKGYFAKEIVPV 208          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.126e-16
Identity = 60/196 (30.61%), Postives = 95/196 (48.47%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVD 589
            VIV   RT + ++K G FK+  A+DL A ++K ++++   ++P+ + DI  G V           R AA  AG P +VP  TVNR C S +QA+ D A AI  G  D  +  G+E M    ++     +P   + T        MG+T+E +A   G++R++QD                G+F+ EI+ +     D
Sbjct:    5 VIVDCIRTPMGRSKGGVFKNKRAEDLSAHLMKGLLDRNPAVDPASIDDIYWGCVQQTLEQGFNVARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGAGDTYLIGGVEHMGHVPMTHGNDFHP--GLATSIAQAAGSMGLTAEYLATLHGISREQQDEFAYRSHQRAQAATVEGRFRREILAMEGHAAD 198          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.126e-16
Identity = 60/191 (31.41%), Postives = 93/191 (48.69%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G F++  A+DL A ++K +I +  +L+P+ + DI  G V           R A+  AG P TV   TVNR C S +QA+ D   AI  G  +  I  G+E M    + +   V+    +          MG+T+E + +  G++RQ QD                G+FK+EI+P+
Sbjct:    4 VVIVDCIRTPMGRSKAGAFRNVRAEDLSAHLMKGLISRNPQLDPNSIEDIYWGCVQQTLEQGFNVARNASLLAGIPHTVAATTVNRLCGSSMQALHDATRAIMVGDAETCIIGGVEHM--GHVPMNHGVDFHPGMSKSVAKAAGMMGLTAEMLGRMHGISRQMQDEFAARSHQRAHAATIEGRFKNEILPI 192          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.470e-16
Identity = 70/208 (33.65%), Postives = 99/208 (47.60%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT--------------VNSISVVGQV--NPKVEIFTQARDCLLPMGITSE--NVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VIV   RT I K   G  KD  A DL A  + A ++K  + PS V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SGL A+A     I+AG +D+ +A G ESMT                 +++V  +  +   ++FT       PMG  +E  N  ++F  TRQEQD                G F DE++PV+
Sbjct:    5 VIVTGARTPIGKLM-GSLKDFSASDLGAITIAAALKKANVAPSIVQYVIIGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGLDAIALADQLIRAGEFDVVVAGGQESMTKAPHLLMDSRSGYKYGDVTIVDHLAYDGLHDVFTNQ-----PMGALTEQRNDVEKF--TRQEQDEFAARSHQKAAAAWKDGVFADEVVPVS 203          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_VIBPA (3-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 60/197 (30.46%), Postives = 95/197 (48.22%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVD 589
            VV+V   RT + ++K G F+ T A+DL A ++K ++ +  ++NPSE+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D   AI  G  +I +  G+E M    + +   V+    +          MG+T+E + +  G++R++QD                G+FK+EI+P      D
Sbjct:    8 VVVVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNIARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGTRAIMTGDAEICLIGGVEHM--GHVPMNHGVDFHPGMSKNVAKAAGMMGLTAEMLGKLHGISREQQDEFAARSHARAHAATLEGRFKNEILPTEGHAAD 202          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 57/191 (29.84%), Postives = 97/191 (50.79%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G  ++T A+ + A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI+ G  D+ +  G+E M    + ++  V+P   +   A      MG+T+E + +  G++R+ QD                GKFKDEIIP+
Sbjct:    8 VVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM--GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPM 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 57/191 (29.84%), Postives = 97/191 (50.79%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G  ++T A+ + A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI+ G  D+ +  G+E M    + ++  V+P   +   A      MG+T+E + +  G++R+ QD                GKFKDEIIP+
Sbjct:    8 VVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM--GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPM 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 57/191 (29.84%), Postives = 97/191 (50.79%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G  ++T A+ + A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI+ G  D+ +  G+E M    + ++  V+P   +   A      MG+T+E + +  G++R+ QD                GKFKDEIIP+
Sbjct:    8 VVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM--GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPM 196          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
FADA_MARAV3.869e-1729.323-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]
PCAF_ACIAD5.054e-1735.12Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
CATF_ACIAD5.054e-1735.12Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_PSEHT1.126e-1630.613-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
FADA_PHOPR1.126e-1631.413-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
THIL_MYCLE1.470e-1633.65Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
FADA_VIBPA1.920e-1630.463-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus... [more]
FADA_PSEAE1.920e-1629.843-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB1.920e-1629.843-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEA71.920e-1629.843-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
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