FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876429_ssr520 microsatellite FC876429_ssr520:520..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15271 contig Ccv1_Contig15271:323..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 60/192 (31.25%), Postives = 95/192 (49.48%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            +VIV   RT + ++K G F+ T A+DL A ++K ++E+   ++P E+ DI  G V           R +A  AG P  V   TVNR C S +QA+ D   AI  G  DI +A G+E M    + +   ++    +          MG+T+E ++++FG+TR++QD                G+F  EI  +N
Sbjct:    4 IVIVDCIRTPMGRSKNGVFRHTRAEDLSAALMKGLLERNPEVDPEELEDIYWGCVQQTLEQGFNIARNSALIAGIPHKVAGVTVNRLCGSSMQALHDATRAIMNGDGDIFMAGGVEHM--GHVPMTHGIDFHPGMNKSVAKASGSMGMTAELLSRKFGITREQQDEFGARSHRKAHEATVEGRFAKEIYAMN 193          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 58/191 (30.37%), Postives = 95/191 (49.74%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G F+ T A+DL A ++K ++E+   ++P+++ DI  G V           R A+  AG P+++   TVNR C S +QA+ D + AI  G  DI I  G+E M    + +   V+    +          MG+T+E + +  G++R++QD                G F  EI+P+
Sbjct:    4 VVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHM--GHVPMNHGVDFHSGLSKNVAKASGMMGLTAEMLGKMHGISREQQDAFAFASHQKAHRATIEGHFDSEILPM 192          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_PARDE (Acetyl-CoA acetyltransferase OS=Paracoccus denitrificans GN=phaA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.508e-16
Identity = 72/213 (33.80%), Postives = 104/213 (48.83%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL--APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS----ISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVE 607
            VIV+A RT +  +  G F +  A +L A VLKAV+E+  ++PSEV + ++G VL  A G   A   R A    G P       +N+ C SGL+ VA  A  +  G   I +A G ESM++      I+   ++     + T  +D L        MG T+ENVA ++ ++R EQD                GKF DEI+PV  K    +T V+
Sbjct:    5 VIVSAARTPV-GSFLGSFANLPAHELGAIVLKAVVERAGIDPSEVSETILGQVLTAAQGQNPA---RQAHIKVGLPRESAAWVINQVCGSGLRTVALAAQQVLLGDARIVVAGGQESMSLAPHAAYIAPGQKMGDMKMLDTMIKDGLWDAFNDYHMGTTAENVAGKWEISRAEQDQFAVASQNKAEAAQKAGKFADEIVPVTIKSRKGETVVD 213          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THLA_CLOD6 (Acetyl-CoA acetyltransferase OS=Clostridium difficile (strain 630) GN=thlA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-16
Identity = 66/214 (30.84%), Postives = 102/214 (47.66%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEK 610
            VVI +A RTA+  +  G FK   A +L     K  I++  + P  + + ++G VL  G  + +  R  A  AG P   P  T+N  C SGL++V+  +  I  G  DI +  G E+M+     V S     ++     + +  +D L        MGIT+EN+A+++ +TR+EQD                GKF +EI+PV  K     T V+K
Sbjct:    4 VVIASAARTAV-GSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQNI-ARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDK 215          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSYCK (3-ketoacyl-CoA thiolase OS=Psychrobacter cryohalolentis (strain K5) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-16
Identity = 57/190 (30.00%), Postives = 90/190 (47.37%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   R+A+ K K G F+   AD + A +++A++E+   +P +V DI+ G V           R     AG P+T   +T+NR C S +QA+   A  I  G  D+ I  G+E M    + ++  V+   E           MG+T+E + +   +TR+EQD                G+F +EII +
Sbjct:    9 VVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTINRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM--GHVGMMHGVDLNPEASKHYAKASNMMGLTAEMLGRMNNITREEQDAFGLESHRRAWAATTEGRFDNEIIGI 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSYA2 (3-ketoacyl-CoA thiolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-16
Identity = 57/190 (30.00%), Postives = 90/190 (47.37%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   R+A+ K K G F+   AD + A +++A++E+   +P +V DI+ G V           R     AG P+T   +TVNR C S +QA+   A  I  G  D+ I  G+E M    + ++  ++   E           MG+T+E + +   +TR+EQD                G+F +EII +
Sbjct:    9 VVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTVNRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNNITREEQDAFGLESHRRAWAATTEGRFDNEIIGI 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-16
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEII 565
            VVIV   RT + ++K G F++  A+DL A ++K+++ +   L+P+E+ DI  G V           R AA  AG P+ V   TVNR C S +QA+ D + AI+ G  DI I  G+E M    +S     +P +         +  MG+T+E + +  G++RQ+QD                G+F  EI+
Sbjct:    4 VVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMKSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMSHGVDFHPGMAKSVAKASGM--MGLTAEMLGKLHGISRQQQDEFAARSHRRAHAATVEGRFAKEIV 190          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.297e-16
Identity = 61/190 (32.11%), Postives = 92/190 (48.42%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIP 568
            VVIV A RT + ++K G F+   A+DL A +++AV+ +   L+ +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   + +  G+E M    + +   V+    +          MG+T+E +A+   ++RQ QD                G FK+EIIP
Sbjct:    4 VVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRAVLSRNPSLDAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDAARAIMVGDAHVSLIGGVEHM--GHVPMNHGVDFHPGLSRSVAKAAGMMGLTAEMLAKMHNISRQMQDEFAARSHQRAHAATLAGYFKNEIIP 191          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEMY (3-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (strain ymp) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.297e-16
Identity = 56/190 (29.47%), Postives = 95/190 (50.00%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VIV   RT + ++K G  ++T A+ + A ++  V+E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+     AI+ G  D+ +  G+E M    + ++  V+P   +   A      MG+T+E + +  G++R+ QD                GKFKDEIIP+
Sbjct:    9 VIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKVLERNAKIDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAVQAIQTGNGDVFVVGGVEHM--GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDAFGERSHRLAHKATVEGKFKDEIIPM 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHISS (3-ketoacyl-CoA thiolase OS=Shigella sonnei (strain Ss046) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.245e-15
Identity = 65/221 (29.41%), Postives = 101/221 (45.70%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G    G+  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQAGLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
FADA_IDILO1.920e-1631.253-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
FADA_ALISL1.920e-1630.373-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
THIL_PARDE2.508e-1633.80Acetyl-CoA acetyltransferase OS=Paracoccus denitri... [more]
THLA_CLOD64.278e-1630.84Acetyl-CoA acetyltransferase OS=Clostridium diffic... [more]
FADA_PSYCK4.278e-1630.003-ketoacyl-CoA thiolase OS=Psychrobacter cryohalol... [more]
FADA_PSYA24.278e-1630.003-ketoacyl-CoA thiolase OS=Psychrobacter arcticus ... [more]
FADA_AERHH4.278e-1632.283-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADA_SERP57.297e-1632.113-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]
FADA_PSEMY7.297e-1629.473-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (... [more]
FADA_SHISS1.245e-1529.413-ketoacyl-CoA thiolase OS=Shigella sonnei (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
back to top