FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ACIAD (3-ketoacyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.245e-15
Identity = 57/190 (30.00%), Postives = 92/190 (48.42%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     A  P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+ R+EQD                G+FK+EI+ V
Sbjct:    9 VVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIVLLADLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGIGREEQDAFGVESHRRAWAATQEGRFKNEIVGV 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G F+ T A+DL A ++K ++++   ++P+++ DI  G V           R +A  AG P+++   TVNR C S +QA+ D + AI  G  +I I  G+E M    + +   V+    +          MG+T+E + +  G++R++QD                G F  EI+P+
Sbjct:    4 VVIVDCIRTPMGRSKNGVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHM--GHVPMNHGVDFHSGLSKSVAKASGMMGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPI 192          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G F+ T A+DL A ++K ++++   ++P+++ DI  G V           R +A  AG P+++   TVNR C S +QA+ D + AI  G  +I I  G+E M    + +   V+    +          MG+T+E + +  G++R++QD                G F  EI+P+
Sbjct:    4 VVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHM--GHVPMNHGVDFHSGLSKSVAKASGMMGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPM 192          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEII 565
            VVIV   RT + ++K G F++  A+DL A ++ +++ +   L+P+E+ DI  G V           R AA  AG P+ V   TVNR C S +QA+ D + AI+ G  DI I  G+E M    +S     +P +         +  MG+T+E + +  G++RQ+QD                G+F  EI+
Sbjct:    4 VVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMSSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMSHGVDFHPGMAKSVAKASGM--MGLTAEMLGKLHGISRQQQDEFAARSHRRAYAATVEGRFAREIV 190          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEU5 (3-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (strain A1501) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.773e-15
Identity = 55/190 (28.95%), Postives = 95/190 (50.00%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VIV   RT + ++K G  ++T A+ + A ++  ++ +  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+     AI+    D+ +  G+E M    +S++  V+P  ++   A      MG+T+E + +  G+TR+ QD                GKFKDEIIP+
Sbjct:    9 VIVDFGRTPMGRSKGGMHRNTRAETMSAQLIDGLLARNPKIDPAEVEDVIWGCVNQTLEQGWNIARMASLLTRIPHTSAGQTVSRLCGSSMSALHTAVQAIQTNNGDVFVIGGVEHM--GHVSMMHGVDPNPQLSLHAAKASGMMGLTAEMLGKMHGITREAQDQFGYRSHQLAWKATQEGKFKDEIIPM 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ENTS8 (3-ketoacyl-CoA thiolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.773e-15
Identity = 63/205 (30.73%), Postives = 96/205 (46.83%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKR 613
            VVIV A RT + ++K G F+   A+DL A ++++++ +  +L  S + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G   + +  G+E M    + +   V+    +          MG+T+E +++  G++R+ QD                G FK EIIP +    D   GV KR
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNPQLEASAIDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDASVCLVGGVEHM--GHVPMNHGVDFHPGLSRNVAKAAGMMGLTAEMLSRMHGISREMQDAFAARSHQRAWAATQAGHFKQEIIPTSGHDAD---GVLKR 203          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_MOUSE (Acetyl-CoA acetyltransferase, mitochondrial OS=Mus musculus GN=Acat1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.730e-15
Identity = 64/208 (30.77%), Postives = 97/208 (46.63%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADD----LLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT----VNSISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKI 583
            VVIV+A RT I     G F  +LA      L    ++  IEK  +   EV ++ +G V+  G  +A   R A   AG P + P  TVN+ C+SG++A+   + ++  G  D+ +A G+ESM+    V S         K+E     +D L      + MG  +EN A++  ++RQEQD                GKF  EI P+   +
Sbjct:   39 VVIVSAIRTPI-----GSFLGSLASQPATKLGTAAIQGAIEKAGIPKEEVKEVYMGNVIQGGEGQA-PTRQATLGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMSRGATPYGGVKLEDLI-VKDGLTDVYNKIHMGNCAENTAKKMNISRQEQDTYALSSYTRSKEAWDAGKFASEITPITISV 239          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.730e-15
Identity = 60/220 (27.27%), Postives = 103/220 (46.82%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV-------------NTKIVDPKTGVEKRVTI 622
            VIV   RT + ++K G F++  A+ L A ++KA++ +  +L+P+ + D++ G V           R AA  AG P+     TVNR C S ++A+   A AI  G+ D  I  G+E M    + +   V+    + T        MG+T+E + +  G+TRQ+QD                G+F +EI  +             + +++ P+T +E   T+
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNMRAESLSAELMKALLVRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNAALLAGIPKQAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIVGGVEHM--GHVPMNHGVDFHPGLATNVAKASGMMGLTAEMLGKMHGITRQQQDEFAVRSHQRAHAATVEGRFANEIHAIEGHDANGALIKVMHDEVIRPETSLESLATL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSYWF (3-ketoacyl-CoA thiolase OS=Psychrobacter sp. (strain PRwf-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.178e-15
Identity = 57/191 (29.84%), Postives = 95/191 (49.74%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKV-EIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RTA+ K+K G F++  AD + A +++A++++   + +EV DI+ G V           R     A  P+T   +TVNR C S +QA+   A  I     D+ I  G+E M    +     +NP+  + + +A +    MG+T+E + +  G+TR++QD                G+F +EII +
Sbjct:    9 VVIVDGVRTAMGKSKNGMFRNVRADSMSAELVRALVKRNDFDTNEVEDIIWGCVNQTLEQGMNIGRNIGLLADIPKTAGGQTVNRLCGSSMQALHTAAAQIMTNQGDVFIIGGVEHMGHVGMMHGIDINPEASKHYAKASNM---MGLTAEMLGRMNGITREQQDEFGYESHRRAWAATQAGRFDNEIIGI 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_KLEP7 (3-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.178e-15
Identity = 65/221 (29.41%), Postives = 99/221 (44.80%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F+   A+DL A ++++++ +   L  S + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G   + +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRHVRAEDLSAHLMRSLLSRNPSLEASAIDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPANTVNRLCGSSMQALHDAARMIMTGDAGVCLIGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARLHGISREMQDQFAARSHARAWAATQSGAFKAEIIPTGGHDADGVLKSFNYDEVIRPETTVETLSTL 222          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
FADA_ACIAD1.245e-1530.003-ketoacyl-CoA thiolase OS=Acinetobacter sp. (stra... [more]
FADA_VIBFM2.123e-1529.323-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_VIBF12.123e-1529.323-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_AERS42.123e-1531.753-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADA_PSEU52.773e-1528.953-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (s... [more]
FADA_ENTS82.773e-1530.733-ketoacyl-CoA thiolase OS=Enterobacter sakazakii ... [more]
THIL_MOUSE4.730e-1530.77Acetyl-CoA acetyltransferase, mitochondrial OS=Mus... [more]
FADA_SHELP4.730e-1527.273-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADA_PSYWF6.178e-1529.843-ketoacyl-CoA thiolase OS=Psychrobacter sp. (stra... [more]
FADA_KLEP76.178e-1529.413-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae s... [more]

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Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
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