FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876429_ssr520 microsatellite FC876429_ssr520:520..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15271 contig Ccv1_Contig15271:323..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.178e-15
Identity = 60/190 (31.58%), Postives = 96/190 (50.53%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIP 568
            VVIV A RT + ++K G F+   A+DL A ++++++ + T L+  E+ DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A AI  G  ++ +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++R+ QD                G F+ EI+P
Sbjct:    4 VVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNTALDAREIDDIYWGCVQQALEQGFNVARNAALLAEIPVSVPATTVNRLCGSSMQALHDAARAIMVGDANVCLIGGVEHMGHVPMNHGVDFHPGLS-RTIAKAAGM-MGLTAEMLARMHNISREMQDQFAARSHQRAYHATQSGAFRHEIVP 191          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_ECO24 (3-ketoacyl-CoA thiolase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.178e-15
Identity = 64/221 (28.96%), Postives = 101/221 (45.70%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I +G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMSRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMSGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N
Sbjct:    4 VVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATN 193          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N
Sbjct:    4 VVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATN 193          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N
Sbjct:    4 VVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATN 193          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N
Sbjct:    4 VVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATN 193          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N
Sbjct:    4 VVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATN 193          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N
Sbjct:    4 VVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATN 193          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 54/212 (25.47%), Postives = 99/212 (46.70%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDD 634
            VVI+ A R+ + K K G F++  A++L A ++K + ++   ++  +V D++ G V           R  +  AG P T   +TVNR C S + A+   A AI  G  D+ +  G+E M    + ++  V+    +        + MG+T+E + +  GV+R++QD                G+F +EI+ +     D       ++ + VD+
Sbjct:    8 VVIIDAVRSPMGKTKNGVFRNVRAENLSAALVKELFKRNPNVDQKDVEDLIWGCVNQTLEQGFNMARAVSLLAGLPITCAAQTVNRLCGSSMSAIHTAAQAIMTGQGDVFVVGGVEHM--GHVGMMHGVDVNPALSKHMAKASMMMGVTAEMLGKMHGVSREDQDAFAVRSHRLAHEATLQGRFNNEIVSIEGHDAD-----GNKILVEVDE 212          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHIBS (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 4 (strain Sb227) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 64/221 (28.96%), Postives = 100/221 (45.25%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN-------------TKIVDPKTGVEKRVTI 622
            VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK+EIIP                +++ P+T VE   T+
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATL 222          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
FADA_ERWCT6.178e-1531.583-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
FADA_ECO246.178e-1528.963-ketoacyl-CoA thiolase OS=Escherichia coli O139:H... [more]
FADA_YERPS1.054e-1432.813-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_YERPP1.054e-1432.813-ketoacyl-CoA thiolase OS=Yersinia pestis (strain... [more]
FADA_YERPN1.054e-1432.813-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERPE1.054e-1432.813-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA... [more]
FADA_YERPA1.054e-1432.813-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERP31.054e-1432.813-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_MARMS1.054e-1425.473-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]
FADA_SHIBS1.376e-1428.963-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]

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Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
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