FC876432

Overview
NameFC876432
Unique NameFC876432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10359 contig Ccv1_Contig10359:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876432 vs. ExPASy Swiss-Prot
Match: MCFR_DICDI (Mitochondrial substrate carrier family protein R OS=Dictyostelium discoideum GN=mcfR PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:  286 SSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR 588
            +S +V  L GGVS  ++K+  AP+ERVK+L Q + +M       + +  +       +K+EG+  LW+GNTA ++R FP  A+ +   DY K   NF  D+
Sbjct:    9 TSPMVTLLAGGVSGVIAKSTIAPLERVKILYQVKSKM-------YSFNSVYGLMKNIIKNEGLAGLWKGNTATILRIFPYSAIQWTSYDYLKN--NFVTDK 100
The following BLAST results are available for this feature:
BLAST of FC876432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MCFR_DICDI1.173e-1135.64Mitochondrial substrate carrier family protein R O... [more]

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Properties
Property NameValue
Genbank descriptionC32004G01EF DevOvary1 Citrus clementina cDNA clone C32004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876432 ID=FC876432; Name=FC876432; organism=Citrus clementina; type=EST; length=663bp
GGACATTACGGAGGTCTCACACTAGGCGACCTTCTCAGGTCACCATCTTC
AGCTGCAAACATGGCAGATGGATCGTATCCATCCGTATTTCAGAAAATGC
AAGGCCAGTCATACTTCATTTCTGGGGTCTCCCCCAATTTGTATGCCCAC
AACTACAGTGTGGCAGGTTCCTTTGTTAATAGAGGATCACAGAATTCTTT
TTGGGCAGCAAGTCAGGGAACTGGCCTGGCACTTGTGTCTCCTGTTTCTC
CTATATTCGTACAAGCTCCATCAGAAAAAAGTCTTTCTTCTTTTTTGGTG
GATTTTCTCATGGGAGGAGTTTCAGCAGCTGTTTCCAAGACTGCAGCTGC
TCCTATTGAGCGGGTTAAGCTTTTGATTCAGAATCAAGATGAGATGATCA
AGAGTGGTCGGCTCTCGCATCCGTACAAGGGGATTTCTGATTGCTTTGGT
AGAACTGTTAAGGATGAAGGCATACTATCTCTTTGGAGAGGCAACACTGC
CAATGTTATCAGATACTTCCCTACCCAGGCCCTGAACTTTGCATTCAAGG
ATTACTTTAAGAGGCTGTTTAACTTCAAGAAAGACAGAGATGGCTACTGG
AAGTGGTTTGCTGGGAACTTGGCATCCGGTGGGGCTGCTGGTGCTTCATC
GCTTCTTTTTGTG
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