FC876435

Overview
NameFC876435
Unique NameFC876435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:13..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876435 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 48/120 (40.00%), Postives = 61/120 (50.83%), Query Frame = 2
Query:  350 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA-ISGVGLVKAFQKSYYTRYGG-GANELAD----GYSTGVGLAAEIIGT--FVLVYTVSRH 685
            G+G LG+A+AFG  +  + Y   GISGGH NPAV+ GL +A K      V Y+VAQ LGA ++   L            GG  AN   +    GYS    L  EII T  F++V   S H
Sbjct:   33 GIGFLGVAFAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGKFPAANLVPYIVAQVLGAVVAAAALYVILTGKAGAEIGGFAANGYGEHSPGGYSLLSALLIEIILTAFFLVVILGSTH 152          
BLAST of FC876435 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 48/155 (30.97%), Postives = 71/155 (45.81%), Query Frame = 2
Query:  212 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 676
            E+   +F +A+ AEF+A            + + S               IL IA AFG  I  L      +SGGHINPA+T  L +  ++SL+RA  Y+ AQ +GAI+G G++         R     N L +  + G  +  E+I TF L   +
Sbjct:    4 EVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV-APLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCI 146          
BLAST of FC876435 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 47/147 (31.97%), Postives = 68/147 (46.26%), Query Frame = 2
Query:  236 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 676
            +A ++EFIA            + +   T  A         G++ +A A    +FV V   A ISGGH+NPAVT GL +   ++++    Y +AQCLG+I    L+            G    +A G     G+  EI+ TF LVYTV
Sbjct:   19 KAYLSEFIATLLFVFAGVGSALAFAKLTSDA----ALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHG----VAAGLGAIEGVVMEIVVTFALVYTV 157          
BLAST of FC876435 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 50/147 (34.01%), Postives = 68/147 (46.26%), Query Frame = 2
Query:  236 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 676
            +A +AEFIA            I Y   T  A         G++ +A A    +FV V   A ISGGH+NPAVT GL +   ++++    Y +AQ LG+     L+K           G    +A G +   G+  EII TF LVYTV
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTADA----ALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHG----VAAGLNGLQGVVMEIIITFALVYTV 157          
BLAST of FC876435 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 48/147 (32.65%), Postives = 67/147 (45.58%), Query Frame = 2
Query:  236 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 676
            +A +AEFI+            + +   T            G++  A A    +FV V   A ISGGH+NPAVTFG F+   ++L R ++Y +AQ LG+     L++       T   G       G S    L  EI+ TF LVYTV
Sbjct:   21 KAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPA----GLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG-----LTGVSVWEALVLEIVMTFGLVYTV 158          
BLAST of FC876435 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 43/107 (40.19%), Postives = 56/107 (52.34%), Query Frame = 2
Query:  356 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 676
            G++  A A    +FV V   A ISGGH+NPAVTFG F+   ++L R ++Y VAQ LG+     L++       T   G       G S    L  EI+ TF LVYTV
Sbjct:   57 GLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFG-----LTGVSVWEALVLEIVMTFGLVYTV 158          
BLAST of FC876435 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 34/103 (33.01%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  368 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 676
            IA+ FG  +  L      ISG HINPAVT G  +  ++S++++V+Y+  QC+GAI+G  ++K       +    G +  +   + G  +  E + TF+LV  V
Sbjct:   57 IAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVV 159          
BLAST of FC876435 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 51/158 (32.28%), Postives = 72/158 (45.57%), Query Frame = 2
Query:  206 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGY-KSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 676
            A E T     RA +AEF++            +   K   D A +       G++ +A A    +F  V     +SGGH+NPAVTF   +  ++S++RA+ Y VAQ +GAI    L++                +A G S   GL  EII TF LVY V
Sbjct:   14 ADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRP----VGFHVASGVSELHGLLMEIILTFALVYVV 167          
BLAST of FC876435 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 49/155 (31.61%), Postives = 69/155 (44.52%), Query Frame = 2
Query:  212 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 676
            E   +SF+RA+ AEF              +  K    PA          +L IA AFG ++  +V     +SG HINPAVTF   +  ++SL RA+ Y+ AQ LGA++G  ++     +   R     N L  G S G     EI  T   V  +
Sbjct:    3 EFRSFSFWRAVFAEFFGTMFYVFFGLGASL--KWAAGPAN---------VLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPA-AIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCI 145          
The following BLAST results are available for this feature:
BLAST of FC876435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
AQPZ1_AGRT53.180e-1140.00Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]
AQP5_HUMAN3.180e-1130.97Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
TIP22_ARATH4.153e-1131.97Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP1_TOBAC4.153e-1134.01Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP11_ORYSJ4.153e-1132.65Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE5.424e-1140.19Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
AQP_HAEIX5.424e-1133.01Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
TIP32_ARATH7.084e-1132.28Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
MIP_RANPI9.252e-1131.61Lens fiber major intrinsic protein OS=Rana pipiens... [more]

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Properties
Property NameValue
Genbank descriptionC32004G04EF DevOvary1 Citrus clementina cDNA clone C32004G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876435 ID=FC876435; Name=FC876435; organism=Citrus clementina; type=EST; length=741bp
GATCCAAAACAACCAAAAAAAAAAAAGAAAAAGAAAAAGGCTTCTCTCTC
GTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTTTCTCTCCAA
ATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGCAGAGCA
CGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCGCTAT
TCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGATAGCT
GAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTGTCAT
TGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGCCG
GCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTGGCATGATCTTTGTC
CTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCAGT
GACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGTGA
TGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTGTTGGGTTGGTC
AAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAACGA
GCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGCCGAGATCATCG
GCACCTTTGTGTTGGTTTACACTGTCTCTCGGCACTGATCCCAGAGAGCG
CAGAGACTCCCATGTCCCGTTTGCACGCTCCCCATGATTGC
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