FC876438 | Citrus Genome Database

Overview


Name	FC876438
Unique Name	FC876438
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	576

Libraries


Library Name	Type
DevOvary1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig15105	contig	Ccv1_Contig15105:11..584.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK5_VITVI (S-adenosylmethionine synthetase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.314e-76
Identity = 114/124 (91.94%), Postives = 120/124 (96.77%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA+++YEKIVRDTCR IGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGHL+KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADIDYEKIVRDTCRTIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQG 124

HSP 2 Score: 50.447 bits (119), Expect = 6.314e-76
Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC+W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCSWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 6.314e-76
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_BRAJU (S-adenosylmethionine synthetase 2 OS=Brassica juncea GN=MSAMS2 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 8.224e-76
Identity = 113/124 (91.13%), Postives = 121/124 (97.58%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ME+FLFTSESVNEGHPDKLCDQISDAILDACLEQDP+SKVACETCTKTN+VMVFGEITTKANV+YEKIVR+TCR IGF+SDDVGLDADNCKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 MESFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRETCREIGFISDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 51.2174 bits (121), Expect = 8.224e-76
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGAKLTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGAKLTEVRKNGTCAWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 8.224e-76
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.071e-75
Identity = 113/124 (91.13%), Postives = 121/124 (97.58%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M+TFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTNLVM+FGEITTKAN++YEKIVRDTCR +GFVS+DVGLDADNCKVLV IEQQSPDIAQGVHGHL+KRPEEIGAGD G
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNLVMIFGEITTKANLDYEKIVRDTCRAVGFVSEDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQG 124

HSP 2 Score: 49.6766 bits (117), Expect = 1.071e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 1.071e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_POPTR (S-adenosylmethionine synthetase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.395e-75
Identity = 112/124 (90.32%), Postives = 118/124 (95.16%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTN+VMVFGEITTK  ++YEKIVRDTCRNIGF+SDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKGKIDYEKIVRDTCRNIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 124

HSP 2 Score: 49.6766 bits (117), Expect = 1.395e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCPWLR 165

HSP 3 Score: 36.965 bits (84), Expect = 1.395e-75
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE++
Sbjct:  123 QGHMFGYATDETPEYM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_ELAUM (S-adenosylmethionine synthetase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.395e-75
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETC+KTN+VMVFGEITTKANV+YEKIVRDTCR IGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCSKTNMVMVFGEITTKANVDYEKIVRDTCRAIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 124

HSP 2 Score: 49.6766 bits (117), Expect = 1.395e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCPWLR 165

HSP 3 Score: 36.965 bits (84), Expect = 1.395e-75
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE++
Sbjct:  123 QGHMFGYATDETPEYM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.815e-75
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA+V+YEKIVRDTCR+IGFVSDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 124

HSP 2 Score: 49.6766 bits (117), Expect = 1.815e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCPWLR 165

HSP 3 Score: 38.1206 bits (87), Expect = 1.815e-75
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPEF+
Sbjct:  123 QGHMFGYATDETPEFM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_BETVU (S-adenosylmethionine synthetase 1 OS=Beta vulgaris GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.083e-75
Identity = 112/128 (87.50%), Postives = 122/128 (95.31%), Query Frame = 2

Query:   68 LKSPMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            + +P++TFLFTSESVNEGHPDK+CDQISDA+LDACL QDP+SKVACETCTKTNLVMVFGEITTK NV+YEKIVR TCR+IGFVS DVGLDADNCKVLVYIEQQSPDIAQGVHGHL+KRPEEIGAGD G
Sbjct:    1 MAAPIDTFLFTSESVNEGHPDKMCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKGNVDYEKIVRQTCRDIGFVSADVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQG 128

HSP 2 Score: 49.6766 bits (117), Expect = 3.083e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  145 SHVLATKLGARLTEVRKNGTCPWLR 169

HSP 3 Score: 35.8094 bits (81), Expect = 3.083e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  127 QGHMFGYATDETPELM 142

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.084e-75
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQ+SDAILDACLEQDPDSKVACETCTKTN+VMVFGEITTKANV+YEKIVR TCR+IGFVSDDVGLDAD C VLV IEQQSPDIAQGVHGHL+KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRSTCRSIGFVSDDVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQG 124

HSP 2 Score: 49.6766 bits (117), Expect = 3.084e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 3.084e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_DENCR (S-adenosylmethionine synthetase OS=Dendrobium crumenatum GN=SAMS PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 4.016e-75
Identity = 113/124 (91.13%), Postives = 120/124 (96.77%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ++TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETC+KTN+VM+FGEITTKANV+YEKIVRDTCR IGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    4 VDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCSKTNMVMIFGEITTKANVDYEKIVRDTCRAIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 127

HSP 2 Score: 49.6766 bits (117), Expect = 4.016e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  144 SHVLATKLGARLTEVRKNGTCPWLR 168

HSP 3 Score: 35.8094 bits (81), Expect = 4.016e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  126 QGHMFGYATDETPELM 141

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 5.231e-75
Identity = 113/128 (88.28%), Postives = 122/128 (95.31%), Query Frame = 2

Query:   68 LKSPMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            + + ++TFLFTSESVNEGHPDKLCDQISDA+LDACL QDP+SKVACETCTKTNLVMVFGEITTKANV+YEKIVR TCR+IGFVS DVGLDADNCKVLVYIEQQSPDIAQGVHGHLS+RPEEIGAGD G
Sbjct:    1 MAAAVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRQTCRDIGFVSADVGLDADNCKVLVYIEQQSPDIAQGVHGHLSRRPEEIGAGDQG 128

HSP 2 Score: 49.6766 bits (117), Expect = 5.231e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  145 SHVLATKLGARLTEVRKNGTCPWLR 169

HSP 3 Score: 35.8094 bits (81), Expect = 5.231e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  127 QGHMFGYATDETPELM 142

The following BLAST results are available for this feature:

BLAST of FC876438 vs. ExPASy Swiss-Prot

BLAST of FC876438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK5_VITVI	6.314e-76	91.94	S-adenosylmethionine synthetase 5 OS=Vitis vinifer...	[more]
METK2_BRAJU	8.224e-76	91.13	S-adenosylmethionine synthetase 2 OS=Brassica junc...	[more]
METK4_VITVI	1.071e-75	91.13	S-adenosylmethionine synthetase 4 OS=Vitis vinifer...	[more]
METK1_POPTR	1.395e-75	90.32	S-adenosylmethionine synthetase 1 OS=Populus trich...	[more]
METK1_ELAUM	1.395e-75	91.94	S-adenosylmethionine synthetase 1 OS=Elaeagnus umb...	[more]
METK_CARPA	1.815e-75	91.13	S-adenosylmethionine synthetase OS=Carica papaya G...	[more]
METK1_BETVU	3.083e-75	87.50	S-adenosylmethionine synthetase 1 OS=Beta vulgaris...	[more]
METK2_POPTR	3.084e-75	91.94	S-adenosylmethionine synthetase 2 OS=Populus trich...	[more]
METK_DENCR	4.016e-75	91.13	S-adenosylmethionine synthetase OS=Dendrobium crum...	[more]
METK1_ATRNU	5.231e-75	88.28	S-adenosylmethionine synthetase 1 OS=Atriplex numm...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32004G08EF DevOvary1 Citrus clementina cDNA clone C32004G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876438 ID=FC876438; Name=FC876438; organism=Citrus clementina; type=EST; length=576bp
CCCCCCTCTATATTTCCTTTCTCGGGGGAGATTTCTCTCAATTCTAGATC
TAGCCGGTTCGCAGTTTTTGAAGTCCCCCATGGAGACTTTTTTGTTCACT
TCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTC
CGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGG
CTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATC
ACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCG
CAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTA
AGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTT
CATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATTCAGG
GGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATTGCCTCT
GAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGCA
AGAATGGCACTTGCACTTGGATGAGG