FC876438 | Citrus Genome Database

Overview


Name	FC876438
Unique Name	FC876438
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	576

Libraries


Library Name	Type
DevOvary1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig15105	contig	Ccv1_Contig15105:11..584.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_CATRO (S-adenosylmethionine synthetase 2 OS=Catharanthus roseus GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 5.232e-75
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACL QDP+SKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR IGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGHL+KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNMVMVFGEITTKAQVDYEKIVRDTCRAIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQG 124

HSP 2 Score: 49.6766 bits (117), Expect = 5.232e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 5.232e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_BRARP (S-adenosylmethionine synthetase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.232e-75
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR+IGF+SDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPE+IGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQG 124

HSP 2 Score: 50.0618 bits (118), Expect = 5.232e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT++GAKLTEVRKNGTC W+R
Sbjct:  141 SHVLATKIGAKLTEVRKNGTCRWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 5.232e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK5_BRAJU (S-adenosylmethionine synthetase 5 OS=Brassica juncea GN=MSAMS5 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.232e-75
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR+IGF+SDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPE+IGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQG 124

HSP 2 Score: 50.0618 bits (118), Expect = 5.232e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT++GAKLTEVRKNGTC W+R
Sbjct:  141 SHVLATKIGAKLTEVRKNGTCRWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 5.232e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_BRAJU (S-adenosylmethionine synthetase 3 OS=Brassica juncea GN=MSAMS3 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.232e-75
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR+IGF+SDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPE+IGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQG 124

HSP 2 Score: 50.0618 bits (118), Expect = 5.232e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT++GAKLTEVRKNGTC W+R
Sbjct:  141 SHVLATKIGAKLTEVRKNGTCRWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 5.232e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_BRAJU (S-adenosylmethionine synthetase 1 OS=Brassica juncea GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.232e-75
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR+IGF+SDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPE+IGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQG 124

HSP 2 Score: 50.0618 bits (118), Expect = 5.232e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT++GAKLTEVRKNGTC W+R
Sbjct:  141 SHVLATKIGAKLTEVRKNGTCRWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 5.232e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_SOLLC (S-adenosylmethionine synthetase 2 OS=Solanum lycopersicum GN=SAM2 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.232e-75
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDP+SKVACETCTKTNLVMVFGEITTKAN++YEKIVRDTCR IGFVS DVGLDADNC+VLV IEQQSPDIAQGVHGHL+KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKANIDYEKIVRDTCREIGFVSPDVGLDADNCRVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQG 124

HSP 2 Score: 50.447 bits (119), Expect = 5.232e-75
Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC+W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCSWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 5.232e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_ELAUM (S-adenosylmethionine synthetase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.814e-75
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETC+KTN+VMVFGEITTKANV+YEKIVRDTCR IGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCSKTNMVMVFGEITTKANVDYEKIVRDTCRTIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 124

HSP 2 Score: 47.7506 bits (112), Expect = 6.814e-75
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRK+GTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKDGTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 6.814e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.814e-75
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M+TFLFTSESVNEGHPDKLCDQ+SDAILDACLEQDP+SKVACETCTKTN+VMVFGEITTKA VNYEKIVRDTCR IGFVS DVGLDADNCKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVNYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 49.6766 bits (117), Expect = 6.814e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGAKLTEVRKNGTC W+R
Sbjct:  141 THVLATKLGAKLTEVRKNGTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 6.814e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_LITCN (S-adenosylmethionine synthetase OS=Litchi chinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.814e-75
Identity = 111/124 (89.52%), Postives = 120/124 (96.77%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDPDSKVACETCT+TN+VMVFGEITTKANV+YE+IVRDTCR+IGF SDDVGLDADNCKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTRTNMVMVFGEITTKANVDYEQIVRDTCRSIGFTSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 50.0618 bits (118), Expect = 6.814e-75
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCAWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 6.814e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_DAUCA (S-adenosylmethionine synthetase 1 OS=Daucus carota GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 8.861e-75
Identity = 111/124 (89.52%), Postives = 120/124 (96.77%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M+TFL+TSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETC+KTN+VMVFGEITTKANV+YEKIV  TCR+IGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGHL+KRPE+IGAGD G
Sbjct:    1 MDTFLYTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCSKTNMVMVFGEITTKANVDYEKIVHKTCRDIGFVSDDVGLDADNCKVLVQIEQQSPDIAQGVHGHLTKRPEDIGAGDQG 124

HSP 2 Score: 50.8322 bits (120), Expect = 8.861e-75
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGAKLTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGAKLTEVRKNGTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 8.861e-75
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

The following BLAST results are available for this feature:

BLAST of FC876438 vs. ExPASy Swiss-Prot

BLAST of FC876438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK2_CATRO	5.232e-75	91.94	S-adenosylmethionine synthetase 2 OS=Catharanthus ...	[more]
METK_BRARP	5.232e-75	90.32	S-adenosylmethionine synthetase OS=Brassica rapa s...	[more]
METK5_BRAJU	5.232e-75	90.32	S-adenosylmethionine synthetase 5 OS=Brassica junc...	[more]
METK3_BRAJU	5.232e-75	90.32	S-adenosylmethionine synthetase 3 OS=Brassica junc...	[more]
METK1_BRAJU	5.232e-75	90.32	S-adenosylmethionine synthetase 1 OS=Brassica junc...	[more]
METK2_SOLLC	5.232e-75	90.32	S-adenosylmethionine synthetase 2 OS=Solanum lycop...	[more]
METK2_ELAUM	6.814e-75	91.94	S-adenosylmethionine synthetase 2 OS=Elaeagnus umb...	[more]
METK1_VITVI	6.814e-75	91.13	S-adenosylmethionine synthetase 1 OS=Vitis vinifer...	[more]
METK_LITCN	6.814e-75	89.52	S-adenosylmethionine synthetase OS=Litchi chinensi...	[more]
METK1_DAUCA	8.861e-75	89.52	S-adenosylmethionine synthetase 1 OS=Daucus carota...	[more]

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Properties


Property Name	Value
Genbank description	C32004G08EF DevOvary1 Citrus clementina cDNA clone C32004G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876438 ID=FC876438; Name=FC876438; organism=Citrus clementina; type=EST; length=576bp
CCCCCCTCTATATTTCCTTTCTCGGGGGAGATTTCTCTCAATTCTAGATC
TAGCCGGTTCGCAGTTTTTGAAGTCCCCCATGGAGACTTTTTTGTTCACT
TCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTC
CGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGG
CTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATC
ACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCG
CAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTA
AGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTT
CATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATTCAGG
GGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATTGCCTCT
GAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGCA
AGAATGGCACTTGCACTTGGATGAGG