FC876438 | Citrus Genome Database

Overview


Name	FC876438
Unique Name	FC876438
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	576

Libraries


Library Name	Type
DevOvary1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig15105	contig	Ccv1_Contig15105:11..584.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.156e-74
Identity = 112/128 (87.50%), Postives = 122/128 (95.31%), Query Frame = 2

Query:   68 LKSPMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            + + ++TFLFTSESVNEGHPDKLCDQISDA+LDACL QDP+SKVACETCTKTNLVMVFGEITTKANV+YEKIVR TCR+IGFVS DVGLDADNCKVLVYIEQQSPDIAQGVHGHL++RPEEIGAGD G
Sbjct:    1 MAAAVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRQTCRDIGFVSADVGLDADNCKVLVYIEQQSPDIAQGVHGHLTRRPEEIGAGDQG 128

HSP 2 Score: 49.6766 bits (117), Expect = 1.156e-74
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  145 SHVLATKLGARLTEVRKNGTCPWLR 169

HSP 3 Score: 35.8094 bits (81), Expect = 1.156e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  127 QGHMFGYATDETPELM 142

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.156e-74
Identity = 112/124 (90.32%), Postives = 120/124 (96.77%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M+TFL TSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETC+KTN+VMVFGEITTKANV+YEKIVR TCR+IGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGHL+KRPE+IGAGD G
Sbjct:    1 MDTFLNTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCSKTNMVMVFGEITTKANVDYEKIVRKTCRDIGFVSDDVGLDADNCKVLVQIEQQSPDIAQGVHGHLTKRPEDIGAGDQG 124

HSP 2 Score: 50.8322 bits (120), Expect = 1.156e-74
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGAKLTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGAKLTEVRKNGTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 1.156e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.506e-74
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 2

Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ETFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTN+VMVFGEITTKANV+YEKIVRDTCR IGF+SDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPEE+GAGD G
Sbjct:    3 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRTIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQG 125

HSP 2 Score: 47.7506 bits (112), Expect = 1.506e-74
Identity = 19/25 (76.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LG++LTEVRKNGTC W+R
Sbjct:  142 THVLATKLGSRLTEVRKNGTCAWLR 166

HSP 3 Score: 35.8094 bits (81), Expect = 1.506e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  124 QGHMFGYATDETPELM 139

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_POPDE (S-adenosylmethionine synthetase OS=Populus deltoides GN=METK PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.506e-74
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 2

Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ETFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA+V+YEKIVRDTCRNIGF S DVGLDADNCKVLV IEQQSPDIAQGVHGH SKRPEEIGAGD G
Sbjct:    3 ETFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRNIGFTSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFSKRPEEIGAGDQG 125

HSP 2 Score: 50.0618 bits (118), Expect = 1.506e-74
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  142 SHVLATKLGARLTEVRKNGTCAWLR 166

HSP 3 Score: 35.8094 bits (81), Expect = 1.506e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  124 QGHMFGYATDETPELM 139

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.506e-74
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 2

Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ETFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA+V+YEKIVRDTCRNIGF S DVGLDADNCKVLV IEQQSPDIAQGVHGH SKRPEEIGAGD G
Sbjct:    3 ETFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRNIGFTSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFSKRPEEIGAGDQG 125

HSP 2 Score: 50.0618 bits (118), Expect = 1.506e-74
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  142 SHVLATKLGARLTEVRKNGTCAWLR 166

HSP 3 Score: 35.8094 bits (81), Expect = 1.506e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  124 QGHMFGYATDETPELM 139

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.506e-74
Identity = 110/124 (88.71%), Postives = 120/124 (96.77%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ME+FLFTSESVNEGHPDKLCDQ+SDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKAN++YEKIVRDTCR+IGFVS DVGLDADNCKVLV IEQQSPDIAQGVHGHL+KRPE++GAGD G
Sbjct:    1 MESFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANIDYEKIVRDTCRSIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEDVGAGDQG 124

HSP 2 Score: 50.0618 bits (118), Expect = 1.506e-74
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCAWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 1.506e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_ARATH (S-adenosylmethionine synthetase 2 OS=Arabidopsis thaliana GN=SAM2 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.506e-74
Identity = 111/124 (89.52%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTN+VMVFGEITTKA ++YEKIVRDTCR+IGF+SDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPE+IGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQG 124

HSP 2 Score: 48.9062 bits (115), Expect = 1.506e-74
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT++GA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKIGARLTEVRKNGTCRWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 1.506e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_CAMSI (S-adenosylmethionine synthetase OS=Camellia sinensis GN=SAM PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.555e-74
Identity = 115/124 (92.74%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACLEQD DSKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR IGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGHL+KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDQDSKVACETCTKTNMVMVFGEITTKAAVDYEKIVRDTCRTIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQG 124

HSP 2 Score: 49.6766 bits (117), Expect = 2.555e-74
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCPWLR 165

HSP 3 Score: 32.7278 bits (73), Expect = 2.555e-74
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDET E +
Sbjct:  123 QGHMFGYATDETSELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_ARATH (S-adenosylmethionine synthetase 1 OS=Arabidopsis thaliana GN=SAM1 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 3.327e-74
Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR IGFVSDDVGLDAD CKVLV IEQQSPDIAQGVHGH +K PEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIGAGDQG 124

HSP 2 Score: 50.0618 bits (118), Expect = 3.327e-74
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 SHVLATKLGARLTEVRKNGTCAWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 3.327e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.644e-74
Identity = 112/128 (87.50%), Postives = 122/128 (95.31%), Query Frame = 2

Query:   68 LKSPMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            + + ++TFLFTSESVNEGHPDKLCDQISDA+LDACL QDP+SKVACETCTKTNLVMVFGEITTKA+V+YEKIVR TCR+IGFVS DVGLDADNCKVLVYIEQQSPDIAQGVHGHLS+RPEEIGAGD G
Sbjct:    1 MAAAVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKADVDYEKIVRQTCRDIGFVSADVGLDADNCKVLVYIEQQSPDIAQGVHGHLSRRPEEIGAGDQG 128

HSP 2 Score: 49.6766 bits (117), Expect = 5.644e-74
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  145 SHVLATKLGARLTEVRKNGTCPWLR 169

HSP 3 Score: 34.2686 bits (77), Expect = 5.644e-74
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYA+DETPE +
Sbjct:  127 QGHMFGYASDETPELM 142

The following BLAST results are available for this feature:

BLAST of FC876438 vs. ExPASy Swiss-Prot

BLAST of FC876438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK4_ATRNU	1.156e-74	87.50	S-adenosylmethionine synthetase 4 OS=Atriplex numm...	[more]
METK2_DAUCA	1.156e-74	90.32	S-adenosylmethionine synthetase 2 OS=Daucus carota...	[more]
METK_MEDTR	1.506e-74	91.06	S-adenosylmethionine synthetase OS=Medicago trunca...	[more]
METK_POPDE	1.506e-74	91.87	S-adenosylmethionine synthetase OS=Populus deltoid...	[more]
METK3_POPTR	1.506e-74	91.87	S-adenosylmethionine synthetase 3 OS=Populus trich...	[more]
METK2_SUASA	1.506e-74	88.71	S-adenosylmethionine synthetase 2 OS=Suaeda salsa ...	[more]
METK2_ARATH	1.506e-74	89.52	S-adenosylmethionine synthetase 2 OS=Arabidopsis t...	[more]
METK_CAMSI	2.555e-74	92.74	S-adenosylmethionine synthetase OS=Camellia sinens...	[more]
METK1_ARATH	3.327e-74	91.13	S-adenosylmethionine synthetase 1 OS=Arabidopsis t...	[more]
METK2_ATRNU	5.644e-74	87.50	S-adenosylmethionine synthetase 2 OS=Atriplex numm...	[more]

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Properties


Property Name	Value
Genbank description	C32004G08EF DevOvary1 Citrus clementina cDNA clone C32004G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876438 ID=FC876438; Name=FC876438; organism=Citrus clementina; type=EST; length=576bp
CCCCCCTCTATATTTCCTTTCTCGGGGGAGATTTCTCTCAATTCTAGATC
TAGCCGGTTCGCAGTTTTTGAAGTCCCCCATGGAGACTTTTTTGTTCACT
TCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTC
CGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGG
CTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATC
ACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCG
CAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTA
AGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTT
CATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATTCAGG
GGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATTGCCTCT
GAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGCA
AGAATGGCACTTGCACTTGGATGAGG