FC876438

Overview
NameFC876438
Unique NameFC876438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:11..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_COXBN (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=metK PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.714e-30
Identity = 64/122 (52.46%), Postives = 83/122 (68.03%), Query Frame = 2
Query:   86 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            T LFTSESV+EGHPDK+ DQISDA+LDA + QDP+ +VACE   K+ +V V GEITT A  + E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +E+GAGD G
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALISQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGETCAVVTAIGKQSPDIVMGVDG---REDQELGAGDQG 122          

HSP 2 Score: 24.2534 bits (51), Expect = 3.714e-30
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 3
Query:  447 QGHMFGYATDETPEFIASESCSCH 518
            QG MFGYA+ ET  F+ +     H
Sbjct:  121 QGLMFGYASRETDVFMPAPITYAH 144          
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_HAEPS (S-adenosylmethionine synthetase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=metK PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.716e-30
Identity = 67/120 (55.83%), Postives = 82/120 (68.33%), Query Frame = 2
Query:   92 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            LFTSESV+EGHPDK+ DQISDA+LD  L+QDP ++VACET  KT + +V GEITT A V+ E + R    +IG+   D+G DA +C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPDINQGVD---RANPLEQGAGDQG 121          

HSP 2 Score: 24.6386 bits (52), Expect = 3.716e-30
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGIMFGYATNET 131          
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_BACA2 (S-adenosylmethionine synthetase OS=Bacillus amyloliquefaciens (strain FZB42) GN=metK PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.182e-30
Identity = 69/128 (53.91%), Postives = 83/128 (64.84%), Query Frame = 2
Query:   92 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDSG 451
            LFTSESV EGHPDK+CDQISD+ILD  L+ DP+++VACET   T LV+V GEITT   V+  K VR+T + IG+     G DA+ C VL  I++QS DIA GV   L  R         E IGAGD G
Sbjct:    7 LFTSESVTEGHPDKICDQISDSILDEILKNDPNARVACETSVTTGLVLVSGEITTSTYVDIPKTVRETIKEIGYTRAKYGFDAETCAVLTSIDEQSADIAMGVDQALEAREGTMSDAEIEAIGAGDQG 134          
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_BIFLD (S-adenosylmethionine synthetase OS=Bifidobacterium longum (strain DJO10A) GN=metK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.296e-30
Identity = 65/129 (50.39%), Postives = 83/129 (64.34%), Query Frame = 2
Query:   92 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV---------HGHLSKRPEEIGAGDSG 451
            L ++ESV EGHPDK+CDQISDAILD  L QD  S VA ET   T + +VFGE+T++   + +  VR+T RNIG+ S +VGLDAD+C V+V I +QS +I QGV              +R E  GAGD G
Sbjct:    7 LISAESVTEGHPDKVCDQISDAILDDLLAQDSSSHVAVETSAATGVFLVFGEVTSEGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTDDQETAASREERYEAQGAGDQG 135          

HSP 2 Score: 29.261 bits (64), Expect = 4.296e-30
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  447 QGHMFGYATDETP 485
            QG MFGYATDETP
Sbjct:  134 QGVMFGYATDETP 146          

HSP 3 Score: 23.0978 bits (48), Expect = 4.296e-30
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  511 LATQLGAKLTEVRKNGTCTWMR 576
            LA +L  +LTEVRK+G    +R
Sbjct:  155 LAHRLAFRLTEVRKSGEVPHLR 176          
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_STACT (S-adenosylmethionine synthetase OS=Staphylococcus carnosus (strain TM300) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.299e-30
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 2
Query:   92 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR----PEEI---GAGDSG 451
            LFTSESV EGHPDK+ DQISDAILD  L++DPD++VACET   T + M+ GEI+T   V++ K+VRDT   IG+     G D+    V+  I++QSPDIAQ V   L  R     EEI   GAGD G
Sbjct:    7 LFTSESVTEGHPDKIADQISDAILDELLKKDPDARVACETVVTTGMAMIVGEISTATYVDFPKVVRDTVEEIGYTRAKYGYDSQTMAVMSAIDEQSPDIAQAVDRALEYRNEISEEEIEATGAGDQG 133          

HSP 2 Score: 23.8682 bits (50), Expect = 4.299e-30
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  447 QGHMFGYATDETPEFI 494
            QG MFG+AT+ET  ++
Sbjct:  132 QGLMFGFATNETDTYM 147          

HSP 3 Score: 23.8682 bits (50), Expect = 4.299e-30
Identity = 9/19 (47.37%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  520 QLGAKLTEVRKNGTCTWMR 576
            QL  +L++VRK+GT  ++R
Sbjct:  156 QLAKRLSDVRKDGTLKYLR 174          
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_BAUCH (S-adenosylmethionine synthetase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=metK PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.837e-30
Identity = 65/124 (52.42%), Postives = 89/124 (71.77%), Query Frame = 2
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISD +LDA L QD  ++VACET  KT +V+V GEITT A ++ E++ R+T R+IG+ + ++  DA++C VL  I +QSPDI +G++   +  P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDTVLDAILAQDLKARVACETYVKTGMVLVGGEITTNAWIDIEELTRNTIRDIGYTNSEMKFDANSCAVLSIISKQSPDINKGIN---NIDPREQGAGDQG 121          

HSP 2 Score: 23.0978 bits (48), Expect = 4.837e-30
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  514 ATQLGAKLTEVRKNGTCTWM 573
            A +L A+ + VRKNGT  W+
Sbjct:  142 AHRLVARQSLVRKNGTLPWL 161          
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_BACSU (S-adenosylmethionine synthetase OS=Bacillus subtilis GN=metK PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 69/128 (53.91%), Postives = 83/128 (64.84%), Query Frame = 2
Query:   92 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDSG 451
            LFTSESV EGHPDK+CDQISD+ILD  L++DP+++VACET   T LV+V GEITT   V+  K VR T + IG+     G DA+ C VL  I++QS DIA GV   L  R         E IGAGD G
Sbjct:    7 LFTSESVTEGHPDKICDQISDSILDEILKKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKTVRQTIKEIGYTRAKYGFDAETCAVLTSIDEQSADIAMGVDQALEAREGTMSDEEIEAIGAGDQG 134          
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_CORA7 (S-adenosylmethionine synthetase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=metK PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.293e-30
Identity = 67/133 (50.38%), Postives = 77/133 (57.89%), Query Frame = 2
Query:   71 KSPMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR------PEEIGAGDSG 451
            K+     LFTSESV EGHPDK+CD ISDAILDA LE+DPD+ VA ET   T  V V GE+ T   V   +IVR T   IGF S DVG D   C V V I +QS +I  GV      R       ++ GAGD G
Sbjct:    4 KAAQAVRLFTSESVTEGHPDKICDAISDAILDALLEEDPDAHVAVETLVTTGQVHVVGEVRTSGYVEIPQIVRKTLVEIGFTSSDVGFDGHTCGVNVAIGEQSQEIGAGVDASTEVRSGTFEDDDQYGAGDQG 136          

HSP 2 Score: 32.7278 bits (73), Expect = 6.293e-30
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  447 QGHMFGYATDETPEFIASESCSCH 518
            QG MFGYAT+ETPEF+     + H
Sbjct:  135 QGLMFGYATNETPEFMPLPISTAH 158          
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_STRSY (S-adenosylmethionine synthetase OS=Streptococcus suis (strain 05ZYH33) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.296e-30
Identity = 68/130 (52.31%), Postives = 84/130 (64.62%), Query Frame = 2
Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE-------IGAGDSG 451
            E  LFTSESV+EGHPDK+ DQISDAILDA L +DPD+ VA ET   T  V VFGEI+T A V+  ++VRDT   IG+   + G  A++  V   + +QSPDIAQGV+  L  R +        IGAGD G
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTKGEYGFSAESVGVHPSLVEQSPDIAQGVNEALETRQDASQDPLDLIGAGDQG 132          

HSP 2 Score: 28.1054 bits (61), Expect = 6.296e-30
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  447 QGHMFGYATDETPEFI 494
            QG MFG+A DETPE +
Sbjct:  131 QGLMFGFAVDETPELM 146          
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_STRSV (S-adenosylmethionine synthetase OS=Streptococcus sanguinis (strain SK36) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.296e-30
Identity = 69/130 (53.08%), Postives = 84/130 (64.62%), Query Frame = 2
Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP-------EEIGAGDSG 451
            E  LFTSESV+EGHPDK+ DQISDAILDA L QDPD+ VA ET   T  V VFGEI+T A V+  ++VRDT   IG+ + + G  A+   V   + +QSPDIAQGV+  L  R        + IGAGD G
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAVLSQDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTNTEYGFSAETVGVHPSLVEQSPDIAQGVNEALEVRGNADQDPLDLIGAGDQG 132          

HSP 2 Score: 28.1054 bits (61), Expect = 6.296e-30
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  447 QGHMFGYATDETPEFI 494
            QG MFG+A DETPE +
Sbjct:  131 QGLMFGFAVDETPELM 146          
The following BLAST results are available for this feature:
BLAST of FC876438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_COXBN3.714e-3052.46S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_HAEPS3.716e-3055.83S-adenosylmethionine synthetase OS=Haemophilus par... [more]
METK_BACA24.182e-3053.91S-adenosylmethionine synthetase OS=Bacillus amylol... [more]
METK_BIFLD4.296e-3050.39S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_STACT4.299e-3052.76S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_BAUCH4.837e-3052.42S-adenosylmethionine synthetase OS=Baumannia cicad... [more]
METK_BACSU5.462e-3053.91S-adenosylmethionine synthetase OS=Bacillus subtil... [more]
METK_CORA76.293e-3050.38S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_STRSY6.296e-3052.31S-adenosylmethionine synthetase OS=Streptococcus s... [more]
METK_STRSV6.296e-3053.08S-adenosylmethionine synthetase OS=Streptococcus s... [more]

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Properties
Property NameValue
Genbank descriptionC32004G08EF DevOvary1 Citrus clementina cDNA clone C32004G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876438 ID=FC876438; Name=FC876438; organism=Citrus clementina; type=EST; length=576bp
CCCCCCTCTATATTTCCTTTCTCGGGGGAGATTTCTCTCAATTCTAGATC
TAGCCGGTTCGCAGTTTTTGAAGTCCCCCATGGAGACTTTTTTGTTCACT
TCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTC
CGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGG
CTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATC
ACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCG
CAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTA
AGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTT
CATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATTCAGG
GGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATTGCCTCT
GAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGCA
AGAATGGCACTTGCACTTGGATGAGG
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