FC876438 | Citrus Genome Database

Overview


Name	FC876438
Unique Name	FC876438
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	576

Libraries


Library Name	Type
DevOvary1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig15105	contig	Ccv1_Contig15105:11..584.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_PICSI (S-adenosylmethionine synthetase 2 OS=Picea sitchensis GN=METK2 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.675e-73
Identity = 109/124 (87.90%), Postives = 118/124 (95.16%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA+++YE+IVR TCR IGF+SDDVGLDAD+CKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLIQDPDSKVACETCTKTNMVMVFGEITTKADIDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 124

HSP 2 Score: 49.6766 bits (117), Expect = 4.675e-73
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGAKLTEVRKNGTC W+R
Sbjct:  141 THVLATKLGAKLTEVRKNGTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 4.675e-73
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.345e-72
Identity = 112/124 (90.32%), Postives = 118/124 (95.16%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQ+SDAILDACLEQDP+SKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR IGF S DVGLDADNCKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFTSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 44.2838 bits (103), Expect = 1.345e-72
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HV AT+LGAKLTEVRKN TC W+R
Sbjct:  141 THVWATKLGAKLTEVRKNKTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 1.345e-72
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_PICSI (S-adenosylmethionine synthetase 3 OS=Picea sitchensis GN=METK3 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.752e-72
Identity = 109/124 (87.90%), Postives = 117/124 (94.35%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA+V+YE+IVR TCR IGF+SDDVGLDAD+CKVLV IEQQSPDIAQGVHGH +KRPEEIGAG  G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITTKADVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGYQG 124

HSP 2 Score: 50.0618 bits (118), Expect = 1.752e-72
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGAKLTEVRKNGTC W+R
Sbjct:  141 THVLATKLGAKLTEVRKNGTCAWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 1.752e-72
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.752e-72
Identity = 110/124 (88.71%), Postives = 118/124 (95.16%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M+TFLFTSESVNEGHPDKLCDQ+SDAILDACL QDP+SKVACETC+KTN+VMVFGEITTKANV+YEKIVRDTCR IGF S DVGLDADNCKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQVSDAILDACLAQDPESKVACETCSKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFTSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 46.595 bits (109), Expect = 1.752e-72
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGAKLTEVRKN TC W+R
Sbjct:  141 THVLATKLGAKLTEVRKNKTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 1.752e-72
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_ACTCH (S-adenosylmethionine synthetase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.282e-72
Identity = 109/124 (87.90%), Postives = 118/124 (95.16%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M+TFLFTSESVNEGHPDKLCDQ+SDAILDACL+QDP+SKVACE+CTKTN+VMVFGEITTKA VNYEKIVRDTCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQVSDAILDACLKQDPESKVACESCTKTNMVMVFGEITTKAQVNYEKIVRDTCRGIGFTSPDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 47.3654 bits (111), Expect = 2.282e-72
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGAKLTEVRKN TC W+R
Sbjct:  141 THVLATKLGAKLTEVRKNSTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 2.282e-72
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 2.971e-72
Identity = 108/124 (87.10%), Postives = 119/124 (95.97%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ++TFLFTSESVNEGHPDKLCDQISDA+LDACL +DP+SKVACETCTKTN+VMVFGEITTKANV+YEKIVRDTCR IGFVS+DVGLDA++CKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    4 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 127

HSP 2 Score: 48.1358 bits (113), Expect = 2.971e-72
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNG C W+R
Sbjct:  144 SHVLATKLGARLTEVRKNGACAWLR 168

HSP 3 Score: 35.8094 bits (81), Expect = 2.971e-72
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  126 QGHMFGYATDETPELM 141

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_PINBN (S-adenosylmethionine synthetase OS=Pinus banksiana GN=METK PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.972e-72
Identity = 110/124 (88.71%), Postives = 118/124 (95.16%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA+V+YE+IVR TCR IGF+SDDVGLDAD+CKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 124

HSP 2 Score: 49.2914 bits (116), Expect = 2.972e-72
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 1

Query:  505 HVLATQLGAKLTEVRKNGTCTWMR 576
            HVLAT+LGAKLTEVRKNGTC W+R
Sbjct:  142 HVLATKLGAKLTEVRKNGTCPWLR 165

HSP 3 Score: 32.3426 bits (72), Expect = 2.972e-72
Identity = 15/24 (62.50%), Postives = 16/24 (66.67%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFIASESCSCH 518
            QGHMFGYATDET E +      CH
Sbjct:  123 QGHMFGYATDETLELMP----KCH 142

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.871e-72
Identity = 110/124 (88.71%), Postives = 118/124 (95.16%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQ+SDAILDACLEQDP+SKVACETCTKT++VMVFGEITTKA V+YEKIVRDTCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTSMVMVFGEITTKATVDYEKIVRDTCRGIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 46.595 bits (109), Expect = 3.871e-72
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGAKLTEVRKN TC W+R
Sbjct:  141 THVLATKLGAKLTEVRKNKTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 3.871e-72
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.040e-72
Identity = 109/123 (88.62%), Postives = 118/123 (95.93%), Query Frame = 2

Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ETFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR+IGF+SDDVGLDAD+CKVLV IEQQSPDIAQGVHGH +KRPEE+GAGD G
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRDIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQG 126

HSP 2 Score: 47.7506 bits (112), Expect = 5.040e-72
Identity = 19/25 (76.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +H+LAT+LGA+LTEVRKNGTC W+R
Sbjct:  143 THMLATKLGARLTEVRKNGTCAWLR 167

HSP 3 Score: 31.5722 bits (70), Expect = 5.040e-72
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QG MFGYATDETPE +
Sbjct:  125 QGIMFGYATDETPELM 140

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.040e-72
Identity = 109/123 (88.62%), Postives = 118/123 (95.93%), Query Frame = 2

Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ETFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR+IGF+SDDVGLDAD+CKVLV IEQQSPDIAQGVHGH +KRPEE+GAGD G
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRDIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQG 126

HSP 2 Score: 47.7506 bits (112), Expect = 5.040e-72
Identity = 19/25 (76.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +H+LAT+LGA+LTEVRKNGTC W+R
Sbjct:  143 THMLATKLGARLTEVRKNGTCAWLR 167

HSP 3 Score: 31.5722 bits (70), Expect = 5.040e-72
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QG MFGYATDETPE +
Sbjct:  125 QGIMFGYATDETPELM 140

The following BLAST results are available for this feature:

BLAST of FC876438 vs. ExPASy Swiss-Prot

BLAST of FC876438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK2_PICSI	4.675e-73	87.90	S-adenosylmethionine synthetase 2 OS=Picea sitchen...	[more]
METK1_TOBAC	1.345e-72	90.32	S-adenosylmethionine synthetase 1 OS=Nicotiana tab...	[more]
METK3_PICSI	1.752e-72	87.90	S-adenosylmethionine synthetase 3 OS=Picea sitchen...	[more]
METK4_POPTR	1.752e-72	88.71	S-adenosylmethionine synthetase 4 OS=Populus trich...	[more]
METK1_ACTCH	2.282e-72	87.90	S-adenosylmethionine synthetase 1 OS=Actinidia chi...	[more]
METK3_ORYSJ	2.971e-72	87.10	S-adenosylmethionine synthetase 3 OS=Oryza sativa ...	[more]
METK_PINBN	2.972e-72	88.71	S-adenosylmethionine synthetase OS=Pinus banksiana...	[more]
METK2_PETHY	3.871e-72	88.71	S-adenosylmethionine synthetase 2 OS=Petunia hybri...	[more]
METK2_HORVU	5.040e-72	88.62	S-adenosylmethionine synthetase 2 OS=Hordeum vulga...	[more]
METK1_HORVU	5.040e-72	88.62	S-adenosylmethionine synthetase 1 OS=Hordeum vulga...	[more]

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Properties


Property Name	Value
Genbank description	C32004G08EF DevOvary1 Citrus clementina cDNA clone C32004G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876438 ID=FC876438; Name=FC876438; organism=Citrus clementina; type=EST; length=576bp
CCCCCCTCTATATTTCCTTTCTCGGGGGAGATTTCTCTCAATTCTAGATC
TAGCCGGTTCGCAGTTTTTGAAGTCCCCCATGGAGACTTTTTTGTTCACT
TCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTC
CGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGG
CTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATC
ACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCG
CAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTA
AGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTT
CATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATTCAGG
GGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATTGCCTCT
GAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGCA
AGAATGGCACTTGCACTTGGATGAGG