FC876438 | Citrus Genome Database

Overview


Name	FC876438
Unique Name	FC876438
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	576

Libraries


Library Name	Type
DevOvary1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig15105	contig	Ccv1_Contig15105:11..584.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_TRIMO (S-adenosylmethionine synthetase 1 OS=Triticum monococcum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 5.040e-72
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 2

Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ETFLFTSESVNEGHPDKLCDQ+SDA+LDACL QD DSKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCRNIGF+SDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPE+IGAGD G
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDADSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRNIGFISDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQG 126

HSP 2 Score: 50.0618 bits (118), Expect = 5.040e-72
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  143 SHVLATKLGARLTEVRKNGTCAWLR 167

HSP 3 Score: 31.5722 bits (70), Expect = 5.040e-72
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QG MFGYATDETPE +
Sbjct:  125 QGIMFGYATDETPELM 140

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.041e-72
Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQ+SDAILDACLEQDP+SKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 44.2838 bits (103), Expect = 5.041e-72
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HV AT+LGAKLTEVRKN TC W+R
Sbjct:  141 THVWATKLGAKLTEVRKNKTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 5.041e-72
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.217e-71
Identity = 107/124 (86.29%), Postives = 115/124 (92.74%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQ+SDAILDACLEQDP+SKVACETCTKTN+VMVFGEITT A V+YEKIVR TCR IGF+S DVGLDAD C VLV IEQQSPDIAQGVHGHL+K+PE+IGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTSAKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIGAGDQG 124

HSP 2 Score: 46.595 bits (109), Expect = 9.217e-71
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGAKLTEVRKN TC W+R
Sbjct:  141 THVLATKLGAKLTEVRKNKTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 9.217e-71
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.217e-71
Identity = 108/124 (87.10%), Postives = 115/124 (92.74%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDAILDACLEQDP+SKVACETCTKTN+VMVFGEITT A V+YEKIVR TCR IGF+S DVGLDAD C VLV IEQQSPDIAQGVHGHL+K+PE+IGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTAAKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIGAGDQG 124

HSP 2 Score: 46.595 bits (109), Expect = 9.217e-71
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGAKLTEVRKN TC W+R
Sbjct:  141 THVLATKLGAKLTEVRKNKTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 9.217e-71
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.651e-70
Identity = 107/123 (86.99%), Postives = 114/123 (92.68%), Query Frame = 2

Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ETFLFTSESVNEGHPDKLCDQ+SDA+LDACL QD DSKVACET TKTN+VMV GEITTKA V+YEKIVRDTCRNIGF+SDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPEE+GAGD G
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDADSKVACETVTKTNMVMVLGEITTKATVDYEKIVRDTCRNIGFISDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQG 126

HSP 2 Score: 49.6766 bits (117), Expect = 2.651e-70
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  143 SHVLATKLGARLTEVRKNGTCAWVR 167

HSP 3 Score: 31.5722 bits (70), Expect = 2.651e-70
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QG MFGYATDETPE +
Sbjct:  125 QGIMFGYATDETPELM 140

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.869e-64
Identity = 96/124 (77.42%), Postives = 109/124 (87.90%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            +E+FL+TSESVNEGHPDK+CDQ+SDA+LDACLEQDPDSKVACETC KT +VMVFGEITTKA V+YE IVR  C+ IGF S+DVGLDAD CKVLV+IE+QSPDI QGVHG  +K  EEIGAGD G
Sbjct:    4 LESFLYTSESVNEGHPDKICDQVSDAVLDACLEQDPDSKVACETCCKTGMVMVFGEITTKAKVDYEAIVRKVCKEIGFTSEDVGLDADKCKVLVHIEEQSPDIGQGVHGMGTKALEEIGAGDQG 127

HSP 2 Score: 46.9802 bits (110), Expect = 1.869e-64
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLATQLG KLTEVRKNG C W+R
Sbjct:  144 THVLATQLGYKLTEVRKNGVCPWLR 168

HSP 3 Score: 35.8094 bits (81), Expect = 1.869e-64
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  126 QGHMFGYATDETPELM 141

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.205e-58
Identity = 91/121 (75.21%), Postives = 103/121 (85.12%), Query Frame = 2

Query:   89 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            FLFTSESVNEGHPDKL DQISD ILDACLEQDPDSKVACET TKTN+VMVFGEITTKA V+YE +VR  CR++GF+S++ GLD +NC+VLV +  QSPDI QGVHG  +K  EEIGAGD G
Sbjct:    3 FLFTSESVNEGHPDKLADQISDGILDACLEQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISNETGLDGNNCRVLVELHDQSPDIGQGVHGMGTKSLEEIGAGDQG 123

HSP 2 Score: 39.2762 bits (90), Expect = 2.205e-58
Identity = 16/24 (66.67%), Postives = 21/24 (87.50%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWM 573
            +HVLAT+LG +LT VRK+GTC W+
Sbjct:  140 THVLATKLGHRLTVVRKDGTCPWV 163

HSP 3 Score: 35.8094 bits (81), Expect = 2.205e-58
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  122 QGHMFGYATDETPELM 137

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.207e-58
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 2

Query:  161 LDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            +DACLEQD DSKVACETCTKTNLVMVFGEITTKANV+YEKIVR+TCRNIGFVS DVGLDADNCKVLV IEQQSPDIAQGVHGH +K+PEEIGAGD G
Sbjct:    3 VDACLEQDSDSKVACETCTKTNLVMVFGEITTKANVDYEKIVRNTCRNIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKKPEEIGAGDQG 99

HSP 2 Score: 50.0618 bits (118), Expect = 2.207e-58
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  116 SHVLATKLGARLTEVRKNGTCAWLR 140

HSP 3 Score: 35.8094 bits (81), Expect = 2.207e-58
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:   98 QGHMFGYATDETPELM 113

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.817e-57
Identity = 89/121 (73.55%), Postives = 101/121 (83.47%), Query Frame = 2

Query:   89 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            FLFTSESVNEGHPDKL DQISD ILDACL QDPDSKVACET TKTN+VMVFGEITTKA V+YE +VR  CR++GF+SD+ GLD + C+VLV +  QSPDI QGVHG  +K  E+IGAGD G
Sbjct:    3 FLFTSESVNEGHPDKLADQISDGILDACLAQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISDETGLDGNKCRVLVELHDQSPDIGQGVHGMGTKSDEDIGAGDQG 123

HSP 2 Score: 39.2762 bits (90), Expect = 1.817e-57
Identity = 16/24 (66.67%), Postives = 21/24 (87.50%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWM 573
            +HVLAT+LG +LT VRK+GTC W+
Sbjct:  140 THVLATKLGHRLTVVRKDGTCPWV 163

HSP 3 Score: 35.8094 bits (81), Expect = 1.817e-57
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  122 QGHMFGYATDETPELM 137

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 8.846e-57
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 2

Query:  179 QDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            QDPDSKVACETCTKTN+VMVFGEITTK N++YEKIVRDTCRNIGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGHL+KRPEEIGAGD G
Sbjct:    1 QDPDSKVACETCTKTNMVMVFGEITTKGNIDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQG 91

HSP 2 Score: 47.7506 bits (112), Expect = 8.846e-57
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRK+GTC W+R
Sbjct:  108 SHVLATKLGARLTEVRKDGTCPWLR 132

HSP 3 Score: 35.8094 bits (81), Expect = 8.846e-57
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:   90 QGHMFGYATDETPELM 105

The following BLAST results are available for this feature:

BLAST of FC876438 vs. ExPASy Swiss-Prot

BLAST of FC876438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK1_TRIMO	5.040e-72	88.62	S-adenosylmethionine synthetase 1 OS=Triticum mono...	[more]
METK1_PETHY	5.041e-72	89.52	S-adenosylmethionine synthetase 1 OS=Petunia hybri...	[more]
METK4_BRAJU	9.217e-71	86.29	S-adenosylmethionine synthetase 4 OS=Brassica junc...	[more]
METK3_ARATH	9.217e-71	87.10	S-adenosylmethionine synthetase 3 OS=Arabidopsis t...	[more]
METK3_HORVU	2.651e-70	86.99	S-adenosylmethionine synthetase 3 OS=Hordeum vulga...	[more]
METK_CHLRE	1.869e-64	77.42	S-adenosylmethionine synthetase OS=Chlamydomonas r...	[more]
METK_OSTTA	2.205e-58	75.21	S-adenosylmethionine synthetase OS=Ostreococcus ta...	[more]
METK1_PEA	2.207e-58	89.69	S-adenosylmethionine synthetase 1 (Fragment) OS=Pi...	[more]
METK_OSTLU	1.817e-57	73.55	S-adenosylmethionine synthetase OS=Ostreococcus lu...	[more]
METK3_ACTCH	8.846e-57	92.31	S-adenosylmethionine synthetase 3 (Fragment) OS=Ac...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32004G08EF DevOvary1 Citrus clementina cDNA clone C32004G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876438 ID=FC876438; Name=FC876438; organism=Citrus clementina; type=EST; length=576bp
CCCCCCTCTATATTTCCTTTCTCGGGGGAGATTTCTCTCAATTCTAGATC
TAGCCGGTTCGCAGTTTTTGAAGTCCCCCATGGAGACTTTTTTGTTCACT
TCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTC
CGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGG
CTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATC
ACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCG
CAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTA
AGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTT
CATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATTCAGG
GGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATTGCCTCT
GAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGCA
AGAATGGCACTTGCACTTGGATGAGG