FC876441
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23 Identity = 62/155 (40.00%), Postives = 99/155 (63.87%), Query Frame = 2 Query: 143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMV 592 R A+ ++ A+ +++++LGPKGMDK+L S D + +TNDGATIL+ + VDN AK++V++SR QD E+GDGTT V V+A LL +AE L+ + IHP I G+ A++ A E L ++ + G +++ + L+ TTL+SK++ Sbjct: 20 RAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFWQDLMNIAGTTLSSKLL 172
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23 Identity = 62/155 (40.00%), Postives = 98/155 (63.23%), Query Frame = 2 Query: 143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMV 592 R A+ + A+ +++++LGPKGMDK+L S D + +TNDGATIL+ + VDN AK++V++SR QD E+GDGTT V V+A LL +AE L+ + IHP I G+ A++ A E L ++ + G +++ + L+ TTL+SK++ Sbjct: 20 RAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLL 172
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4) HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23 Identity = 62/155 (40.00%), Postives = 98/155 (63.23%), Query Frame = 2 Query: 143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMV 592 R A+ + A+ +++++LGPKGMDK+L S D + +TNDGATIL+ + VDN AK++V++SR QD E+GDGTT V V+A LL +AE L+ + IHP I G+ A++ A E L ++ + G +++ + L+ TTL+SK++ Sbjct: 20 RAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLL 172
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4) HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23 Identity = 62/155 (40.00%), Postives = 98/155 (63.23%), Query Frame = 2 Query: 143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMV 592 R A+ ++ A+ +++++LGPKGMDK+L S D + +TNDGATIL+ + VDN AK++V++SR QD E+GDGTT V V+A LL +AE L+ + IHP I G+ A++ A E L ++ + G ++ + L+ TTL+SK++ Sbjct: 20 RAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREAL--LSSAVDHGSDEARFWQDLMNIAGTTLSSKLL 172
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23 Identity = 60/160 (37.50%), Postives = 92/160 (57.50%), Query Frame = 2 Query: 110 LLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM 589 +++QQ + R A N+SAGK + +L+T+LGP+G KML GD+ +T DG +L +M + + A L+ + +QD GDGTT V+ G LL+Q+E+ L+ IHP IAEG+E+A + LE Q + L D E L+ T+L +K+ Sbjct: 4 MIKQQGAAADSRRGQALLLNISAGKGLQNVLKTNLGPRGTLKMLVGGGGDIKLTKDGKVLLHEMQIQHPTAALIARTATAQDDITGDGTTTNVITIGELLKQSERYLQENIHPRIIAEGFELAKDRCLAFLEEFKQTSQDTL-DRELLISIAKTSLRTKL 162
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3) HSP 1 Score: 107.457 bits (267), Expect = 5.732e-23 Identity = 61/155 (39.35%), Postives = 98/155 (63.23%), Query Frame = 2 Query: 143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMV 592 R A+ ++ A+ +++++LGPKGMDK+L S D + +TNDGATIL+ + VDN AK++V++SR QD E+GDGTT V V+A LL +AE L+ + IHP I G+ A++ A + L + + G +++ + L+ TTL+SK++ Sbjct: 20 RAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQAL--LNSAVDHGSDEVKFRQDLMNIAGTTLSSKLL 172
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3) HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23 Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 2 Query: 143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM 589 R A N+SA + + +LRT+LGPKG KML S GD+ +T DG +L +M + + A L+ +++ +QD GDGTT V++ G LL+QA+ + G+HP I EG+E A A++ LE++ E D E L+ T+L +K+ Sbjct: 15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM---DRETLIDVARTSLRTKV 160
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_BOVIN (T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=2 SV=3) HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23 Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 2 Query: 143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM 589 R A N+SA + + +LRT+LGPKG KML S GD+ +T DG +L +M + + A L+ +++ +QD GDGTT V++ G LL+QA+ + G+HP I EG+E A A++ LE++ E D E L+ T+L +K+ Sbjct: 15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM---DRETLIDVARTSLRTKV 160
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23 Identity = 58/149 (38.93%), Postives = 88/149 (59.06%), Query Frame = 2 Query: 143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM 589 R A N+SA + + +LRT+LGPKG KML S GD+ +T DG +L +M + + A L+ +++ +QD GDGTT V++ G LL+QA+ + G+HP I EG+E A A++ LE+I E D E L+ T+L +K+ Sbjct: 15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQVLEQIKVSREM---DRETLIDVARTSLRTKV 160
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23 Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = 2 Query: 143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM 589 R A N+SA + + +LRT+LGPKG KML S GD+ +T DG +L +M + + A L+ +++ +QD GDGTT V++ G LL+QA+ + G+HP I EG+E A A++ LE + E D E L+ T+L +K+ Sbjct: 15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVKVSREM---DRETLIDVARTSLRTKV 160 The following BLAST results are available for this feature:
BLAST of FC876441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 430
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876441 ID=FC876441; Name=FC876441; organism=Citrus clementina; type=EST; length=616bpback to top |