FC876441

Overview
NameFC876441
Unique NameFC876441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 62/155 (40.00%), Postives = 99/155 (63.87%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMV 592
            R   A+ ++     A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L  ++   + G +++   + L+    TTL+SK++
Sbjct:   20 RAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFWQDLMNIAGTTLSSKLL 172          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 62/155 (40.00%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMV 592
            R   A+  +     A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L  ++   + G +++   + L+    TTL+SK++
Sbjct:   20 RAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLL 172          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 62/155 (40.00%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMV 592
            R   A+  +     A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L  ++   + G +++   + L+    TTL+SK++
Sbjct:   20 RAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLL 172          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23
Identity = 62/155 (40.00%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMV 592
            R   A+ ++     A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L  ++   + G ++    + L+    TTL+SK++
Sbjct:   20 RAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREAL--LSSAVDHGSDEARFWQDLMNIAGTTLSSKLL 172          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 60/160 (37.50%), Postives = 92/160 (57.50%), Query Frame = 2
Query:  110 LLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM 589
            +++QQ   +  R   A   N+SAGK +  +L+T+LGP+G  KML    GD+ +T DG  +L +M + +  A L+   + +QD   GDGTT  V+  G LL+Q+E+ L+  IHP  IAEG+E+A    +  LE   Q  +  L D E L+    T+L +K+
Sbjct:    4 MIKQQGAAADSRRGQALLLNISAGKGLQNVLKTNLGPRGTLKMLVGGGGDIKLTKDGKVLLHEMQIQHPTAALIARTATAQDDITGDGTTTNVITIGELLKQSERYLQENIHPRIIAEGFELAKDRCLAFLEEFKQTSQDTL-DRELLISIAKTSLRTKL 162          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 5.732e-23
Identity = 61/155 (39.35%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMV 592
            R   A+ ++     A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A + L  +    + G +++   + L+    TTL+SK++
Sbjct:   20 RAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQAL--LNSAVDHGSDEVKFRQDLMNIAGTTLSSKLL 172          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM 589
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE++    E    D E L+    T+L +K+
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM---DRETLIDVARTSLRTKV 160          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_BOVIN (T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM 589
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE++    E    D E L+    T+L +K+
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM---DRETLIDVARTSLRTKV 160          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23
Identity = 58/149 (38.93%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM 589
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE+I    E    D E L+    T+L +K+
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQVLEQIKVSREM---DRETLIDVARTSLRTKV 160          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23
Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM 589
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE +    E    D E L+    T+L +K+
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVKVSREM---DRETLIDVARTSLRTKV 160          
The following BLAST results are available for this feature:
BLAST of FC876441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
TCPB_RAT1.155e-2340.00T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_MACFA1.508e-2340.00T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN1.508e-2340.00T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_MOUSE2.573e-2340.00T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPZ_DICDI3.360e-2337.50T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]
TCPB_BOVIN5.732e-2339.35T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPZ_MOUSE7.486e-2338.26T-complex protein 1 subunit zeta OS=Mus musculus G... [more]
TCPZ_BOVIN7.486e-2338.26T-complex protein 1 subunit zeta OS=Bos taurus GN=... [more]
TCPZ_RABIT9.777e-2338.93T-complex protein 1 subunit zeta OS=Oryctolagus cu... [more]
TCPZ_PONAB9.777e-2338.26T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionC32004G11EF DevOvary1 Citrus clementina cDNA clone C32004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876441 ID=FC876441; Name=FC876441; organism=Citrus clementina; type=EST; length=616bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
NCAGCGCAGATTGGCT
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