FC876441

Overview
NameFC876441
Unique NameFC876441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPQ_CANAL (T-complex protein 1 subunit theta OS=Candida albicans GN=CCT8 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 8.565e-19
Identity = 46/127 (36.22%), Postives = 82/127 (64.57%), Query Frame = 2
Query:  167 NVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDL 544
            NV A + +A IL TS+GP G +K++ +  G   ITND AT+L ++++ + + K++++ S+ Q++E+GD T  V+++AG  L  AEKLL  G++   I +G+ +A++  ++ L E + +K E    DL
Sbjct:   31 NVEAVREIASILLTSMGPSGRNKIIVNKLGKKFITNDAATMLNELEIVHPVVKILIQASKQQEFEMGDNTNLVIILAGEFLNVAEKLLTLGLNVSEIIQGFNLANKFVMKTLDELVVEKVESFETDL 157          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPQ_CAEEL (T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=Y55F3AR.3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 50/156 (32.05%), Postives = 91/156 (58.33%), Query Frame = 2
Query:  122 QEEKSRLRGPD-AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSK 586
            +E     +G D A + N+ A   +A  +R++ GP GM+KM+ +    + +TND ATIL+++++ +  A++++  +  Q+ +IGD T  VV++A +LLE A  L+  G+ P  +A GYE A+  A+E L  +  K    + ++E + Q   + + SK
Sbjct:   15 KEGAQHFKGTDEAVQRNIEACTELASQIRSAYGPNGMNKMVINHIEKLFVTNDAATILKELEIQHPAARIIIMATEMQEKQIGDNTNTVVILAAALLEHAANLIHMGMTPQEVAAGYEQAAEKALEILPTLVVKEATDMKNIEEVRQYIRSAITSK 170          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPG_PIG (T-complex protein 1 subunit gamma (Fragment) OS=Sus scrofa GN=CCT3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.237e-17
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  173 SAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQA 418
            +A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  A
Sbjct:    1 NAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVA 82          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPH_ENCCU (T-complex protein 1 subunit eta OS=Encephalitozoon cuniculi GN=CCT7 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 49/139 (35.25%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLN 580
            +NV     +A  L ++LGP GMDK+    +  + +TNDGATIL+ M++ + + +L+V LS SQD E+GDGTT VV++   +L   + L++       I    E    + +EHLE++  + +  +  L  L  TC+T+ N
Sbjct:   23 SNVDVCTKIAEFLESTLGPYGMDKLFAGKE--IVVTNDGATILKHMNIRHPVGRLLVALSESQDSEVGDGTTSVVILTTEILSCLKPLIKDNFDLGCIKGCLEELRMMCIEHLEKMGMELDDEV--LYKLAGTCITSKN 157          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPQ_YEAST (T-complex protein 1 subunit theta OS=Saccharomyces cerevisiae GN=CCT8 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 43/140 (30.71%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  167 NVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSK 586
            +++A + + ++  TS+GP G +K++ +  G + ITND AT+L ++D+ +   K++V  +  Q  ++GDGT  V+++AG LL  +EKL+  G+  + I +GY MA +  ++ L+ +        ND   L++     ++SK
Sbjct:   31 SIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSK 170          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPH_TETTH (T-complex protein 1 subunit eta (Fragment) OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 44/111 (39.64%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  272 NDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER----IAQKFEFGLNDLEPLVQTCMTTLNSKMV 592
            NDGATIL  +D+ +  AK +V+++++QD E+GDGTT V ++AG LL++++  +E G+HP  I +GY+ A ++A++ L      +A K E      E L++   T+LNSK++
Sbjct:    1 NDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKYFIEEGMHPQIITKGYKEALKLALQFLHENAHSVADKNE--TEKREMLIKCAQTSLNSKLL 109          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPZ_PIG (T-complex protein 1 subunit zeta (Fragment) OS=Sus scrofa GN=CCT6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  155 AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHP 448
            A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDG T  V++ G LL+QA+  +  G+HP
Sbjct:    4 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGXTSNVLIIGELLKQADLYISEGLHP 101          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_LACZE (60 kDa chaperonin OS=Lactobacillus zeae GN=groL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 520
            DA+ A +     +A  ++T+LGPKG + +L    G   ITNDG TI + +D++    N  AKL+ E++   +   GDGTT   V+A S++ +  K +  G +P+ I  G E A++ AV+ L +I+ K
Sbjct:   10 DARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHK 136          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_LACCB (60 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 520
            DA+ A +     +A  ++T+LGPKG + +L    G   ITNDG TI + +D++    N  AKL+ E++   +   GDGTT   V+A S++ +  K +  G +P+ I  G E A++ AV+ L +I+ K
Sbjct:   10 DARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHK 136          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_LACC3 (60 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 520
            DA+ A +     +A  ++T+LGPKG + +L    G   ITNDG TI + +D++    N  AKL+ E++   +   GDGTT   V+A S++ +  K +  G +P+ I  G E A++ AV+ L +I+ K
Sbjct:   10 DARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHK 136          
The following BLAST results are available for this feature:
BLAST of FC876441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
TCPQ_CANAL8.565e-1936.22T-complex protein 1 subunit theta OS=Candida albic... [more]
TCPQ_CAEEL1.119e-1832.05T-complex protein 1 subunit theta OS=Caenorhabditi... [more]
TCPG_PIG1.237e-1751.22T-complex protein 1 subunit gamma (Fragment) OS=Su... [more]
TCPH_ENCCU3.599e-1735.25T-complex protein 1 subunit eta OS=Encephalitozoon... [more]
TCPQ_YEAST8.017e-1730.71T-complex protein 1 subunit theta OS=Saccharomyces... [more]
TCPH_TETTH3.046e-1639.64T-complex protein 1 subunit eta (Fragment) OS=Tetr... [more]
TCPZ_PIG6.787e-1640.82T-complex protein 1 subunit zeta (Fragment) OS=Sus... [more]
CH60_LACZE9.800e-1535.4360 kDa chaperonin OS=Lactobacillus zeae GN=groL PE... [more]
CH60_LACCB9.800e-1535.4360 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH60_LACC39.800e-1535.4360 kDa chaperonin OS=Lactobacillus casei (strain A... [more]

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Properties
Property NameValue
Genbank descriptionC32004G11EF DevOvary1 Citrus clementina cDNA clone C32004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876441 ID=FC876441; Name=FC876441; organism=Citrus clementina; type=EST; length=616bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
NCAGCGCAGATTGGCT
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