FC876441

Overview
NameFC876441
Unique NameFC876441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_BACP2 (60 kDa chaperonin OS=Bacillus pumilus (strain SAFR-032) GN=groL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 41/129 (31.78%), Postives = 77/129 (59.69%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 526
            +A++A +    A+A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ + +G E A ++A+E L  I++  E
Sbjct:   10 EARRAMLRGVDALADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPVGVRKGIEEAVKVALEGLHEISKPIE 138          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_STAES (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groL PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 41/129 (31.78%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 526
            DA++A +     +A  ++ ++GPKG + +L        ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A S++++  K +  G +P+ + +G + A ++A+E L  I+QK E
Sbjct:   10 DARQAMLRGVDKLANAVKVTIGPKGRNVVLDKDYTTPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQSMIQEGLKNVTSGANPVGLRQGIDKAVQVAIEALHEISQKVE 138          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_STAEQ (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 41/129 (31.78%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 526
            DA++A +     +A  ++ ++GPKG + +L        ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A S++++  K +  G +P+ + +G + A ++A+E L  I+QK E
Sbjct:   10 DARQAMLRGVDKLANAVKVTIGPKGRNVVLDKDYTTPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQSMIQEGLKNVTSGANPVGLRQGIDKAVQVAIEALHEISQKVE 138          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_STAEP (60 kDa chaperonin OS=Staphylococcus epidermidis GN=groL PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 41/129 (31.78%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 526
            DA++A +     +A  ++ ++GPKG + +L        ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A S++++  K +  G +P+ + +G + A ++A+E L  I+QK E
Sbjct:   10 DARQAMLRGVDKLANAVKVTIGPKGRNVVLDKDYTTPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQSMIQEGLKNVTSGANPVGLRQGIDKAVQVAIEALHEISQKVE 138          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_LISW6 (60 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 41/129 (31.78%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 526
            DA++A +     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++++  K +  G +P+ +  G E A   A+E L+ I++  E
Sbjct:   10 DARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIE 138          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_LISMO (60 kDa chaperonin OS=Listeria monocytogenes GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 41/129 (31.78%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 526
            DA++A +     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++++  K +  G +P+ +  G E A   A+E L+ I++  E
Sbjct:   10 DARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIE 138          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_LISMH (60 kDa chaperonin OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 41/129 (31.78%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 526
            DA++A +     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++++  K +  G +P+ +  G E A   A+E L+ I++  E
Sbjct:   10 DARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIE 138          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_LISMF (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 41/129 (31.78%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 526
            DA++A +     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++++  K +  G +P+ +  G E A   A+E L+ I++  E
Sbjct:   10 DARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIE 138          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_LISMC (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 41/129 (31.78%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 526
            DA++A +     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++++  K +  G +P+ +  G E A   A+E L+ I++  E
Sbjct:   10 DARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIE 138          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: CH60_LISIN (60 kDa chaperonin OS=Listeria innocua GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 41/129 (31.78%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 526
            DA++A +     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++++  K +  G +P+ +  G E A   A+E L+ I++  E
Sbjct:   10 DARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIE 138          
The following BLAST results are available for this feature:
BLAST of FC876441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
CH60_BACP21.084e-1331.7860 kDa chaperonin OS=Bacillus pumilus (strain SAFR... [more]
CH60_STAES1.415e-1331.7860 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEQ1.415e-1331.7860 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEP1.415e-1331.7860 kDa chaperonin OS=Staphylococcus epidermidis GN... [more]
CH60_LISW61.848e-1331.7860 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH60_LISMO1.848e-1331.7860 kDa chaperonin OS=Listeria monocytogenes GN=gro... [more]
CH60_LISMH1.848e-1331.7860 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMF1.848e-1331.7860 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMC1.848e-1331.7860 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISIN1.848e-1331.7860 kDa chaperonin OS=Listeria innocua GN=groL PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC32004G11EF DevOvary1 Citrus clementina cDNA clone C32004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876441 ID=FC876441; Name=FC876441; organism=Citrus clementina; type=EST; length=616bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
NCAGCGCAGATTGGCT
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