FC876441

Overview
NameFC876441
Unique NameFC876441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.904e-36
Identity = 82/174 (47.13%), Postives = 117/174 (67.24%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL++AE+LL++ IHP  I +GY +AS+ A E L+ IA+  E   +D E L++  MT +  K     +  LA
Sbjct:    6 GQPILIL--PEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYTLASQKAQEILDSIAK--EVKPDDEEVLLKAAMTAITGKAAEEEREYLA 175          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.904e-36
Identity = 79/151 (52.32%), Postives = 111/151 (73.51%), Query Frame = 2
Query:  164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  +  L+D E L+ +  T+LNSK+V++    L+
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQ--LSDRETLLNSATTSLNSKVVSQYSSLLS 184          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.904e-36
Identity = 79/151 (52.32%), Postives = 111/151 (73.51%), Query Frame = 2
Query:  164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  +  L+D E L+ +  T+LNSK+V++    L+
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQ--LSDRETLLNSATTSLNSKVVSQYSSLLS 184          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.711e-36
Identity = 80/162 (49.38%), Postives = 116/162 (71.60%), Query Frame = 2
Query:  131 KSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            K+R +  + +KAN+ A +AVA  +RTSLGPKGMDKM+++  GD+ I+NDG TIL+QM + + +AK++VE+S +QD E GDGTT VV+M G+LL  AEKLL +GIHP  IAE ++ A+  +VE L  ++ K    L+D E LV+   T+L+SK+V++    LA
Sbjct:   14 KNREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTSRGDIIISNDGHTILKQMAILHPVAKMLVEVSGAQDVEAGDGTTSVVIMTGALLGAAEKLLNKGIHPTIIAESFQRAAERSVEILLNMSTK--ISLDDKEALVRAASTSLSSKIVSQHSSFLA 173          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.930e-35
Identity = 80/174 (45.98%), Postives = 116/174 (66.67%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL++AE+LL++ IHP  + +GY +A+  A E L+ IA+  E   +D E L++  MT +  K     +  LA
Sbjct:    6 GQPILIL--PEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEKAQEILDSIAK--EVKPDDEEVLLKAAMTAITGKAAEEEREYLA 175          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.930e-35
Identity = 78/164 (47.56%), Postives = 112/164 (68.29%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSK 586
            G P ++L+  E   R  G DAQ+ N+ A + +A  ++++LGPKGMDKML    GDV ITNDG TIL++MDV++  AK+++E++++QD E+GDGTT  VV+AG LL++AE+LL++ IHP  IA GY MA+  AVE LE IA   +  + D E L +   T +  K
Sbjct:    6 GTPVLILK--EGTQRTVGRDAQRMNIMAARVIAEAVKSTLGPKGMDKMLVDSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKKAEELLDQDIHPTVIARGYRMAANKAVEILESIA--MDIDVEDEETLKKIAATAITGK 165          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.930e-35
Identity = 81/167 (48.50%), Postives = 116/167 (69.46%), Query Frame = 2
Query:  116 RQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            R++  K + +    + +N+ A KAVA  +RTSLGP+GMDKM+QS +GDVTITNDGATIL QM V +  AK++VELS++QD E GDGTT VVVMAG+LL+ A+ LL +GIHP  I+E ++ A+  A + L+ ++   +   + L  L +   T+LNSK+V++    LA
Sbjct:   19 RERNFKDKDKPESVRNSNIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDAL--LNKMATTSLNSKVVSQHSWLLA 183          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 80/174 (45.98%), Postives = 114/174 (65.52%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA+  +  + D E L +  MT +  K     +  LA
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDSIAR--DVDVEDREILKKAAMTAITGKAAEEEREYLA 175          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 78/173 (45.09%), Postives = 116/173 (67.05%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            +P  +L Q  + SR  G +AQ+ N+ AGK +A  +RT+LGPKGMDKML    GD+ ITNDG TIL +MD+ +  AK++VE++++Q+ E+GDGTT  V++AG LL++AEKL+E G+HP  IA GY  A+  A E LE I+ +     +D + L++  +T +  K   R + +LA
Sbjct:    6 QPIFILPQ--DTSRYVGREAQRINILAGKVLAETVRTTLGPKGMDKMLVDSLGDIVITNDGVTILREMDISHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKEAEKLIEMGVHPTIIALGYRNAALKAQEILEEISME----ASDRDTLMKVAITAMTGKGSERAKEKLA 172          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.998e-35
Identity = 81/166 (48.80%), Postives = 116/166 (69.88%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMV 592
            G P I+L++  ++S   G +A +AN+ A +A+A+IL+T+ GPKGMDKML    GD+TITN+GATIL++MDV +  AK++V++S+ Q+ E GDGT   V+ AG LL++AEKLL+  IHP  I EGY+ A R A E +E IA+   +  +D+E L     T+LNSK V
Sbjct:   13 GIPVIILKEGTQRSY--GREALRANIMAVRAIAQILKTTYGPKGMDKMLVDSLGDITITNNGATILDKMDVAHPAAKMLVQISKGQEDEAGDGTKTTVIFAGELLKEAEKLLDINIHPTIIVEGYKEALRKASEVIESIAEPVSY--DDVEKLKLIAKTSLNSKAV 174          
The following BLAST results are available for this feature:
BLAST of FC876441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
THS_PYRHO5.904e-3647.13Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
TCPD_RAT5.904e-3652.32T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE5.904e-3652.32T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_KLULA7.711e-3649.38T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
THS_PYRAB2.930e-3545.98Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSA_ARCFU2.930e-3547.56Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
TCPD_CAEEL2.930e-3548.50T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
THSB_THEK83.827e-3545.98Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSA_METTH3.827e-3545.09Thermosome subunit alpha OS=Methanobacterium therm... [more]
THSB_AERPE4.998e-3548.80Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]

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Properties
Property NameValue
Genbank descriptionC32004G11EF DevOvary1 Citrus clementina cDNA clone C32004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876441 ID=FC876441; Name=FC876441; organism=Citrus clementina; type=EST; length=616bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
NCAGCGCAGATTGGCT
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