FC876441

Overview
NameFC876441
Unique NameFC876441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 6.528e-35
Identity = 79/174 (45.40%), Postives = 115/174 (66.09%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA+  +  + D E L +  +T++  K     +  LA
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAK--DVDVEDREILKKAAVTSITGKAAEEEREYLA 175          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.528e-35
Identity = 78/174 (44.83%), Postives = 116/174 (66.67%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G+P  +L+  E   R  G DA K N+ A  A++  +R+SLGP+GMDKML    GD+ ITNDG TIL++MDV++  AK+MVE+S++QD  +GDGTT  V++AG LL+QA+ L+ + +HP  I+EGY MAS  A   ++ I+ K   G ++   L++   T+LNSK  +  + +LA
Sbjct:    4 GQPIFILK--EGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTK--IGADEKALLLKMAQTSLNSKSASVAKDKLA 173          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.528e-35
Identity = 79/174 (45.40%), Postives = 115/174 (66.09%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA+  +  + D E L +  +T++  K     +  LA
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAK--DVDVEDREILKKAAVTSITGKAAEEEREYLA 175          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 82/174 (47.13%), Postives = 112/174 (64.37%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            GR  ++L   E   R  G DAQ+ N+ A + VA  +RT+LGP GMDKML    GDV +TNDG TILE+MD+++  AK++VE++++Q+ E+GDGTT  VV+AG LL +AE LL++ IHP  IA GY MA   A E LE IA+  E   +D E L +   T +  K V + +  LA
Sbjct:    8 GRQVLIL--PEGYQRFVGRDAQRMNIMAARVVAETVRTTLGPMGMDKMLVDEMGDVVVTNDGVTILEEMDIEHPAAKMVVEVAKTQEDEVGDGTTTAVVLAGELLHKAEDLLQQDIHPTVIARGYRMAVEKAEEILEEIAE--EIDPDDEETLKKIAKTAMTGKGVEKARDYLA 177          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 80/174 (45.98%), Postives = 115/174 (66.09%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E LE IA K     +D E L++  MT++  K     +  LA
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILEEIAIK--VNPDDEETLLRIAMTSITGKNAESHKELLA 175          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 79/164 (48.17%), Postives = 106/164 (64.63%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSK 586
            G+P I+L   E+  R  G DAQ  N++AGKAVA  +RT+LGPKGMDKML    G V +TNDG TIL++MD+D+  A ++VE+S +Q+ E+GDGTT  V+ AG LL+QAE LL+  +H   IA+GY  A+  A E LE  A   E   +D E L +   T +  K
Sbjct:    8 GQPMIILG--EDSQRTSGQDAQSMNITAGKAVAEAVRTTLGPKGMDKMLVDSGGQVVVTNDGVTILKEMDIDHPAANMIVEVSETQEDEVGDGTTTAVINAGELLDQAEDLLDSDVHATTIAQGYRQAAEKAKEVLEDNA--IEVTEDDRETLTKIAATAMTGK 167          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.481e-34
Identity = 78/173 (45.09%), Postives = 114/173 (65.90%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            +P ++L   E  SR  G DAQ+ N+ AGK +A  +RT+LGPKGMDKML    GD+ +TNDG TIL++MD+++  AK++VE++++Q+ E+GDGTT  V++AG LL++AE LLE  IHP  IA GY  A+  A E L+ IA       +D + L++  MT +  K   + +  LA
Sbjct:    6 QPILVL--PEGTSRYLGRDAQRMNILAGKILAETVRTTLGPKGMDKMLVDSLGDIVVTNDGVTILKEMDIEHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKKAENLLEMEIHPTIIAMGYRQAAEKAQEILDDIA----IDASDRDTLMKVAMTAMTGKGTEKAREPLA 172          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.240e-34
Identity = 79/174 (45.40%), Postives = 117/174 (67.24%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G P I+L+  E  SR  G +A + N++A KAV   L+++ GP+GMDKML    GD+TITNDGATIL++MD+ +  AKL+V++++ QD E  DGT   V++AG L+++AE+LL + IHP  I  G++ A   A++ +E IAQK    +ND++ L +  MT+LNSK V   +  LA
Sbjct:   13 GIPVIILK--EGSSRTYGKEALRINIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYKEIHPTIIVSGFKKAEEQALKTIEEIAQK--VSVNDMDILKKVAMTSLNSKAVAGAREYLA 182          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.240e-34
Identity = 76/160 (47.50%), Postives = 111/160 (69.38%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL-EPLVQTCMT 571
            G+P I++   ++  R++  DAQ+ N+SA +AVA  +R++LGPKGMDKML S  GDVT+TNDG TIL++MD+DN  A+++VE++ +Q+ E GDGTT  V +AG LL+ AE LLER IHP  I +GY +A+  A E ++ +A   +    DL   + +T MT
Sbjct:    9 GQPMIIMG--DDAQRVKDRDAQEHNISAARAVADAVRSTLGPKGMDKMLVSSMGDVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAEQAREEVDNVAVDVDPDDKDLIRSVAETSMT 166          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.240e-34
Identity = 76/162 (46.91%), Postives = 114/162 (70.37%), Query Frame = 2
Query:  131 KSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            + R +  + + +N+ A ++VA  +RTSLGPKGMDKM+Q+  G+V +TNDGATIL+ + V +  AK++V+LS +QD E GDGTT VV++AGS+L  AEKLL++GIHP  IAE ++ A+   V+ ++  A   E  L+D E L++   T+LNSK+V++    LA
Sbjct:   12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE--LSDRESLLRAATTSLNSKIVSQYSNLLA 171          
The following BLAST results are available for this feature:
BLAST of FC876441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
THSB_THEK16.528e-3545.40Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_THEAC6.528e-3544.83Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSB_PYRKO6.528e-3545.40Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THS_METKA1.454e-3447.13Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THSA_THEK81.454e-3445.98Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THS1_HALVO1.454e-3448.17Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THSB_METTH2.481e-3445.09Thermosome subunit beta OS=Methanobacterium thermo... [more]
THSB_SULTO3.240e-3445.40Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THSB_HALSA3.240e-3447.50Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPD_SCHPO3.240e-3446.91T-complex protein 1 subunit delta OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionC32004G11EF DevOvary1 Citrus clementina cDNA clone C32004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876441 ID=FC876441; Name=FC876441; organism=Citrus clementina; type=EST; length=616bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
NCAGCGCAGATTGGCT
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