FC876441

Overview
NameFC876441
Unique NameFC876441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.755e-32
Identity = 69/155 (44.52%), Postives = 110/155 (70.97%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            + +K+N+ A +AV+  +RTSLGPKGMDKM+++ +G++ I+NDGATIL+ M V +  A+++V++S +QD E GDGTT V ++ GSLL  AEKLL +GIHP  I+E ++ A+  + E L  ++ K    L+D E L++   T+L+SK+V++    L+
Sbjct:   24 EVRKSNILAARAVSDAIRTSLGPKGMDKMIKTKNGEIIISNDGATILKHMAVLHPAARMLVDVSAAQDVEAGDGTTSVAILTGSLLGAAEKLLNKGIHPTLISESFQRAATRSAEVLLEMSHK--ISLDDKEALIRAASTSLSSKIVSQHSSLLS 176          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.152e-31
Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 2
Query:  125 EEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMT 571
            E  +R  G  AQ +N+ AGKAVA  +RT+LGP+GMDKML    G+V ITNDGATILE+MD+++  A+++VE+S++Q+ E+GDGTT   V+ G LL  AE LL+  +HP  I EGY  A+RIA + ++ +        + L  + ++ MT
Sbjct:   14 EGTNRTHGRSAQDSNIRAGKAVAEAVRTTLGPRGMDKMLVDSSGEVVITNDGATILEKMDIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDDDLHPTVIVEGYTEAARIAQDAIDDMVLDVTLDDDLLRKVAESSMT 162          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30
Identity = 68/149 (45.64%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNR 598
            D + +N+ A +AVA  +RTSLGPKGMDKM+ SP+ +V I+NDGATIL+ +++ +  AK++ EL+++QD E GDGTT V V+AGSLL    +L+ +GIHP  I+E + +A   ++E L  ++      L D   LV++  T+LNSK+V++
Sbjct:   26 DVRTSNIVAARAVADAIRTSLGPKGMDKMIISPNNEVLISNDGATILQNLELRHPAAKMLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLMAKGIHPSIISEAFNLALNKSLEVL--VSMSVPVSLTDRVSLVKSATTSLNSKVVSQ 172          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.258e-30
Identity = 66/155 (42.58%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVN 595
            R  G   +K NV A  + A  ++TSLGP G+DKML    GDVTITNDGATIL+ +DV++  AK++V+L++ QD E+GDGTT VV++A +LL+ A++L+ R +HP  +  GY +A R A ++++   +   + +N L    L+    T ++SK++N
Sbjct:    8 RTSGESVRKQNVLAACSFANFVKTSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQ---EHMAYDVNKLGKAGLINVARTAMSSKLIN 159          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.409e-29
Identity = 67/154 (43.51%), Postives = 106/154 (68.83%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMV 592
            R +G D +  NV+A  A+A I+++SLGP+G+DKML    GDVTITNDGATIL Q++V +  AK++VELS+ QD E+GDGTT VV++A  LL++A +L++  +HP  I  G+++A++ A  +   I +     + +L  E L+    T+++SK++
Sbjct:   11 RDQGQDVRTNNVTAVMAIANIVKSSLGPQGLDKMLVDDVGDVTITNDGATILRQLEVQHPAAKVIVELSQLQDKEVGDGTTSVVILAAELLKRANELIKNKVHPTSIITGFKIAAKEACTY---IKEHLAISVEELGREALINAAKTSMSSKLI 161          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.409e-29
Identity = 70/154 (45.45%), Postives = 104/154 (67.53%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVN 595
            R  G D +  NV A +AV+ I++TSLGP G+DKML    GDVTITNDGATIL  ++V++  AK++VEL+  QD E+GDGTT VV++A  LL++A  L+   IHP  I  GY +A R + +++ E++  K E  L  + PL+    T+++SK+++
Sbjct:   14 RQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVE-KLGKV-PLINCAKTSMSSKLIS 165          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.352e-29
Identity = 65/152 (42.76%), Postives = 99/152 (65.13%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMV 592
            ++ G D +  NV A  A+A ++++SLGP G+DKML    GDVT+TNDGATIL  +DV++   K++VEL++ QD E+GDGTT VV++A  LL +A +L++  IHP  I  GY +A R AV+ +  +       L   E L+    T+++SK++
Sbjct:   16 KISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGK-ESLINVAKTSMSSKII 166          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.557e-28
Identity = 72/168 (42.86%), Postives = 100/168 (59.52%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEF-GLNDLEPLVQTCM-TTLNSKMVN 595
            R  + +  Q  K R +G  AQ AN+ A +AV+ I+RT+LGPK M KML  P G + +TNDG  IL ++DV +  AK M+EL+R+QD E+GDGTT V+++AG +L   E  LER IHP  I   Y  A    V   E   +  +    NDL+ +V +C+ T  +SK  N
Sbjct:    4 RAAVFILNQNAK-REQGRKAQTANIKAARAVSDIVRTTLGPKSMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELARAQDEEVGDGTTSVIILAGEILSAVESFLERDIHPTVIVGAYFQALEEIVRLTESYGEPIDIENENDLQKIVSSCIGTKFSSKWGN 170          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.557e-28
Identity = 63/154 (40.91%), Postives = 106/154 (68.83%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMV 592
            R  G   +  NV+A  A+A I+++SLGP G+DKML    GDV +TNDGATIL+Q++V++   K++VEL++ QD E+GDGTT VV++A  LL++A++L+++ +HP  I  GY +A + AV++   I++   F  + +  + +V    T+++SK++
Sbjct:   15 RTTGQGIRSQNVTAAVAIANIVKSSLGPVGLDKMLVDDVGDVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKY---ISENISFTSDSIGRQSVVNAAKTSMSSKII 165          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.469e-28
Identity = 68/162 (41.98%), Postives = 105/162 (64.81%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPD----GDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            RG  A+ ++     A+  +++++LGPKGMDK+L S +    G + +TNDGATIL+ + VDN  AK++V++S +QD+E+GDGTT V V+A  LL++AEKL+ + IHP  I  GY  A  IA E L++     E G N  + L++   TTL SK++++ +   A
Sbjct:   15 RGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKK--SSIESGDNIRDDLLKIARTTLGSKILSQHKEHFA 174          
The following BLAST results are available for this feature:
BLAST of FC876441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
TCPD_DEBHA6.755e-3244.52T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
THS3_HALVO1.152e-3146.31Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPD_DICDI1.274e-3045.64T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPA_SCHMA8.258e-3042.58T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPA_TETPY1.409e-2943.51T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPA_ARATH1.409e-2945.45T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
TCPA_SCHPO5.352e-2942.76T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPG_OXYGR1.557e-2842.86T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPA_CAEEL1.557e-2840.91T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPB_CAEEL3.469e-2841.98T-complex protein 1 subunit beta OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionC32004G11EF DevOvary1 Citrus clementina cDNA clone C32004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876441 ID=FC876441; Name=FC876441; organism=Citrus clementina; type=EST; length=616bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
NCAGCGCAGATTGGCT
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