FC876441

Overview
NameFC876441
Unique NameFC876441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.836e-27
Identity = 65/154 (42.21%), Postives = 100/154 (64.94%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMV 592
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  I  GY +A + AV ++    I    E G    + L+    T+++SK++
Sbjct:   11 RTTGESIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELG---KDCLINAAKTSMSSKII 161          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.836e-27
Identity = 64/154 (41.56%), Postives = 100/154 (64.94%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMV 592
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++
Sbjct:   11 RSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELG---RDCLINAAKTSMSSKII 161          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.836e-27
Identity = 62/155 (40.00%), Postives = 105/155 (67.74%), Query Frame = 2
Query:  134 SRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMV 592
            +R  G   +  NV A  +++ I+++SLGP G+DKML    GDVT+TNDGATIL  ++V++  AK++VEL++ QD E+GDGTT VV++A  LL+ A++L+++ IHP  I  GY +A + A ++   I++     +++L  + L+    T+++SK++
Sbjct:   13 TRQSGASVRTQNVMAALSISNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACKY---ISEHLTAPVDELGRDSLINIAKTSMSSKII 164          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.836e-27
Identity = 65/154 (42.21%), Postives = 100/154 (64.94%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMV 592
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L  T  T+++SK++
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINADELG---RDCLTNTAKTSMSSKII 161          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 65/168 (38.69%), Postives = 108/168 (64.29%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNR 598
            P ILL++  + S+  G     +N+SA + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   K E  +   + L +  MT L+SK++++
Sbjct:    5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQ 170          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 64/154 (41.56%), Postives = 100/154 (64.94%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMV 592
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELG---RDCLINAAKTSMSSKII 161          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 64/154 (41.56%), Postives = 100/154 (64.94%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMV 592
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG---RDCLINAAKTSMSSKII 161          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 64/154 (41.56%), Postives = 100/154 (64.94%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMV 592
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG---RDCLINAAKTSMSSKVI 161          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.116e-26
Identity = 64/168 (38.10%), Postives = 108/168 (64.29%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNR 598
            P ILL++  + S+  G     +N+SA + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   K +  +   + L +  MT L+SK++++
Sbjct:    5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQ 170          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.458e-26
Identity = 63/154 (40.91%), Postives = 99/154 (64.29%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMV 592
            R  G   +  NV A  ++A I+++S GP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++
Sbjct:   11 RSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELG---RDCLINAAKTSMSSKII 161          
The following BLAST results are available for this feature:
BLAST of FC876441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
TCPA_MONDO3.836e-2742.21T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPA_HUMAN3.836e-2741.56T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
TCPA_DROME3.836e-2740.00T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPA1_MOUSE3.836e-2742.21T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
TCPH_BOVIN6.543e-2738.69T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPA_RAT6.543e-2741.56T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_CRIGR6.543e-2741.56T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPA_BOVIN6.543e-2741.56T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPH_MOUSE1.116e-2638.10T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPA2_MOUSE1.458e-2640.91T-complex protein 1 subunit alpha B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC32004G11EF DevOvary1 Citrus clementina cDNA clone C32004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876441 ID=FC876441; Name=FC876441; organism=Citrus clementina; type=EST; length=616bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
NCAGCGCAGATTGGCT
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