FC876444

Overview
NameFC876444
Unique NameFC876444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:14..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.418e-59
Identity = 122/198 (61.62%), Postives = 141/198 (71.21%), Query Frame = 1
Query:  121 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV*LSSRPLIPE-SARDS 711
            ++++  V +HG    KDY DPPP P FD  EL  WSF+RA IAEFIA            IGYK +TDP      CA VG+LGIAW+FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+RA++YM+AQC GAI GVGLVKAF K  Y ++GGGAN +A GY+ G    AE+IGTFVLV        P+ SARDS
Sbjct:    6 ISEEGQVHQHG----KDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDP------CASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDS 193          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.160e-59
Identity = 121/183 (66.12%), Postives = 131/183 (71.58%), Query Frame = 1
Query:  166 KDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV*LSSRPLIPE-SARDS 711
            KDYTDPPP PLFD  EL  WSFYRALIAEFIA            IGYK Q+    + D C GVG LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGL LARKVS++RAVMY+VAQCLG I GVG+VK   K  Y   GGGAN +A GYS G  L AEIIGTFVLV        P+ +ARDS
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQS----SADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDS 193          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.905e-54
Identity = 119/200 (59.50%), Postives = 134/200 (67.00%), Query Frame = 1
Query:  115 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV-*LSSRPLIPESARDS 711
            FP  +  G +   +   KDY +PPP PLF+  EL+ WSFYRA IAEFIA            +G K     A N+  CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM+ QCLGAI G G+VK FQ + Y   GGGAN +A GY+ G GL AEIIGTFVLV  + S      SARDS
Sbjct:   15 FPERQPIGTSAQST--DKDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKR----APNM--CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDS 206          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.984e-53
Identity = 115/193 (59.59%), Postives = 131/193 (67.88%), Query Frame = 1
Query:  136 GVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV-*LSSRPLIPESARDS 711
            G A  G+   KDY +PPP PLF+A ELT WSFYRA IAEF+A            +G       +K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAI G G+VK FQ+  Y   GGGAN +  GY+ G GL AEI+GTFVLV  + S      SARDS
Sbjct:   22 GTAAQGT-EEKDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGV------SKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDS 207          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 3.384e-53
Identity = 110/184 (59.78%), Postives = 124/184 (67.39%), Query Frame = 1
Query:  115 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            F   +  G A  GS   KDY +PPP PLF+  EL  WSFYRA IAEF+A            +G  + T        CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAI G G+VK FQK  Y   GGGAN +A GY+ G GL AEI+GTF+LV
Sbjct:   15 FSERQPIGTAAQGS-DDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSK------CATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILV 191          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.419e-53
Identity = 111/184 (60.33%), Postives = 126/184 (68.48%), Query Frame = 1
Query:  115 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            FP  +  G +   + S KDY +PPP PLF+  EL  WSF+RA IAEFIA            +G K      ++ + CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV Y+V QCLGAI G G+VK FQ   Y   GGGAN +A GY+ G GL AEIIGTFVLV
Sbjct:   15 FPERQPIGTS---AQSDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVK------RSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLV 189          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.419e-53
Identity = 106/177 (59.89%), Postives = 123/177 (69.49%), Query Frame = 1
Query:  136 GVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            G A  G+   KDY +PPP PLF+  EL  WSFYRA IAEF+A            +G       +K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+V QCLGAI G G+VK FQ+  Y   GGGAN +A GY+ G GL AEI+GTF+LV
Sbjct:   22 GTAAQGAGDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGV------SKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILV 192          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.772e-53
Identity = 118/200 (59.00%), Postives = 134/200 (67.00%), Query Frame = 1
Query:  115 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV-*LSSRPLIPESARDS 711
            FP  +  G +   + + KDY +PPP P F+  EL+ WSFYRA IAEFIA            +G K     A N+  CA VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV Y+V QCLGAI G G+VK FQ + Y   GGGAN +A GY+ G GL AEIIGTFVLV  + S      SARDS
Sbjct:   15 FPERQPIGTS---AQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKR----APNM--CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDS 205          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.772e-53
Identity = 105/184 (57.07%), Postives = 125/184 (67.93%), Query Frame = 1
Query:  115 FPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            F   +  G A  G+   KDY +PPP PLF+  EL  WSFYRA IAEF+A            +G       +K+   CA VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGA+ G G+VK FQ+  Y   GGGAN +A GY+ G GL AEI+GTF+LV
Sbjct:   15 FSERQPIGTAAQGAADDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGV------SKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILV 192          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 7.538e-53
Identity = 110/191 (57.59%), Postives = 128/191 (67.02%), Query Frame = 1
Query:  145 EHGSYSAK-DYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV*LSSRPLIPE-SARDS 711
            E G+ +AK  Y DPPP PL D  EL KWS YRALIAEF+A            IGYK+Q      VD C GVG LG+AW+FG  IFVLVYCT G+SGGHINPAVT GLF  RK+SLVR V+Y+VAQCLGAI+G G+VK   K  Y   GGGAN ++DGYS    L AEI+GTF+LV        P+ +ARDS
Sbjct:   13 EGGAAAAKAPYWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQR---ATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFSATDPKRTARDS 200          
The following BLAST results are available for this feature:
BLAST of FC876444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
PIP1_ATRCA1.418e-5961.62Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_ORYSJ3.160e-5966.12Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP14_ARATH8.905e-5459.50Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP15_MAIZE1.984e-5359.59Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP12_ORYSJ3.384e-5359.78Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH4.419e-5360.33Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_ORYSJ4.419e-5359.89Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP13_ARATH5.772e-5359.00Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP12_MAIZE5.772e-5357.07Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP27_ORYSJ7.538e-5357.59Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC32004H03EF DevOvary1 Citrus clementina cDNA clone C32004H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876444 ID=FC876444; Name=FC876444; organism=Citrus clementina; type=EST; length=742bp
GATCCAAAACAACCAAAAAAAACAAGAAAAAGAAAAAGGCTTCTCTCTCG
TTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTTTCTCTCCAAA
TCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGCAGAGCAC
GGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCGCTATT
CGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGATAGCTG
AGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTGTCATT
GGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGCCGG
CGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTGGCATGATCTTTGTCC
TCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCAGTG
ACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGTGAT
GTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTGTTGGGTTGGTCA
AGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAACGAG
CTGGCCGATGGGTACAGCATAGGCGTTGGATTGGCCGCCGAGATCATCGG
CACCTTTGTGTTGGTTTAACTGTCTTCTCGGCCACTGATCCCAGAGAGCG
CCAGAGACTCCATGTCCCGTTTTGCACGCTCCCATGGATTGC
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