FC876445

Overview
NameFC876445
Unique NameFC876445
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14552 contig Ccv1_Contig14552:77..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: AMPM_SULSO (Methionine aminopeptidase OS=Sulfolobus solfataricus GN=map PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 47/173 (27.17%), Postives = 78/173 (45.09%), Query Frame = 3
Query:  135 VTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDEPVTGRXXXXXXXXXXXXXXXLRLVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQF 653
            + K   A +IA KA   V  + K   K++D+CE+ +S I E             +   +FP  +S+N+   H+SP  +DE  + EG ++K+DLG HIDGFI+  A T  L       R               +   + G    ++   I+KV  A   K +  +  H ++++
Sbjct:    6 LNKLLLAGKIAAKARDEVSLDVKASAKVLDICEEVESIIIEN------------KAFPSFPCNISINSEAAHYSPTINDEKRIPEGAVVKLDLGAHIDGFISDTAITISLD-----SRYQRLLDASKTALEAAITNFKAGLSIGEIGRVIEKVIRAQGYKPIRNLGGHLIRRY 161          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: AMPM2_SCHPO (Methionine aminopeptidase 2 OS=Schizosaccharomyces pombe GN=fma2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 38/124 (30.65%), Postives = 69/124 (55.65%), Query Frame = 3
Query:   93 EREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIR---EQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 455
            + E++ LD  + +     + AAE+  +A Q   S  KPG+ ++D+    ++  R   E+ G         ++ G+ FP+ VS+N+   H++P A D T+L+E D++K+D+G H++G I   A T
Sbjct:  100 DEEKRALDRQNFDQYNDLRRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDG---------LKSGIGFPTGVSLNHCAAHYTPNAGDTTILKEKDVMKVDIGVHVNGRIVDSAFT 214          
BLAST of FC876445 vs. ExPASy Swiss-Prot
Match: ARX1_CANGA (Probable metalloprotease ARX1 OS=Candida glabrata GN=ARX1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 47/150 (31.33%), Postives = 71/150 (47.33%), Query Frame = 3
Query:  105 KELDLTSPEVVTKYKSAAEIANKALQLVVS---------ECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSV--------------------NNTLCHFSPLASDET-VLQEGDMIKIDLGCHIDGFIAVVAHTHVL 464
            K+ ++    V+ KY+++ +I   AL+ V           + +  + I +LC   DSFI  +    YK+  K  ERG+A P+ + V                    NN     SP AS  T  L+ GD++KI LGCHIDG+ + V HT V+
Sbjct:   15 KDKNVLQETVLDKYRTSGQITQTALKFVTDLINDVYHYKKVQTPLSISELCLMADSFIVNRLEQYYKH--KVNERGIALPTMIDVDAVASGWCPEVDDTENIKKWNNNSDETSPFASSITGYLRHGDVVKISLGCHIDGYTSQVTHTMVI 162          
The following BLAST results are available for this feature:
BLAST of FC876445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
AMPM_SULSO5.713e-1127.17Methionine aminopeptidase OS=Sulfolobus solfataric... [more]
AMPM2_SCHPO5.713e-1130.65Methionine aminopeptidase 2 OS=Schizosaccharomyces... [more]
ARX1_CANGA9.744e-1131.33Probable metalloprotease ARX1 OS=Candida glabrata ... [more]

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Properties
Property NameValue
Genbank descriptionC32004H04EF DevOvary1 Citrus clementina cDNA clone C32004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876445 ID=FC876445; Name=FC876445; organism=Citrus clementina; type=EST; length=661bp
GGATTAGACTTTAACAGAACTCTCATTTCCCGTTTCTTTTACAGATTGTT
TGGTAGATTTTTTCTACAAAAATCAAAACGATGTCGGACGATGAAAGGGA
GGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTTGTCACCAAATACAAAA
GCGCTGCTGAGATCGCCAATAAGGCGTTGCAGTTGGTAGTATCAGAATGC
AAACCCGGTGTTAAGATTGTTGACCTTTGTGAGAAGGGAGATTCATTTAT
TAGAGAACAAACCGGCAACATGTACAAGAATGTAAAGAAGAAGATCGAGA
GGGGCGTTGCATTCCCAAGTTGTGTTTCTGTTAACAACACACTCTGTCAT
TTTTCACCACTTGCAAGTGATGAGACAGTCTTGCAAGAAGGAGACATGAT
CAAGATTGATTTGGGATGTCACATAGATGGGTTTATTGCTGTAGTTGCAC
ACACTCATGTCCTCCAGGATGAGCCTGTAACAGGCAGGGCAGCTGATGTT
ATTGCTGCAGCAAATACTGCTGCTGAGGTTGCCTTGAGGCTTGTAAGGCC
AGGAAAGAAGAACAAAGATGTAACAGAAGCCATTCAGAAGGTAGCTGCTG
CATATGATTGCAAGATTGTTGAAGGTGTTCTCAGCCACCAGCTGAAGCAG
TTTGTGATTGA
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