FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2081_STAAM (Probable DEAD-box ATP-dependent RNA helicase SAV2081 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2081 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2072_STAAC (Probable DEAD-box ATP-dependent RNA helicase SACOL2072 OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2037_STAA3 (Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2037 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2004_STAAW (Probable DEAD-box ATP-dependent RNA helicase MW2004 OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y1985_STAAS (Probable DEAD-box ATP-dependent RNA helicase SAS1985 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y1885_STAAN (Probable DEAD-box ATP-dependent RNA helicase SA1885 OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RHLE_ECOLI (ATP-dependent RNA helicase rhlE OS=Escherichia coli (strain K12) GN=rhlE PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-HRLAEDPYG-----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            ++F  LGL+   ++   E G R PTP+Q   IP +LEG+D++  AQTG+GKTA F LP+L H +   P+      V AL++TPTRELA Q+ E  +     L++R  VV GG+ +
Sbjct:    1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSI 115          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_HAEIN (Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae GN=deaD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548
            +TF  LGL E+ ++   +LG   P+P+Q  CIP +L G DVLG+AQTGSGKTAAFALP+L ++         LV+ PTRELA Q+A+
Sbjct:    5 ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVAD 91          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y1965_STAAB (Probable DEAD-box ATP-dependent RNA helicase SAB1965c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1965c PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVW-KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_GEOKA (DEAD-box ATP-dependent RNA helicase cshA OS=Geobacillus kaustophilus GN=cshA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            TF  LGL++  ++  + +G    TP+Q   IP  L+ KDV+G AQTG+GKTAAF +PI+ ++      V ALV+ PTRELA Q++E+   +G+   +R   + GG D+
Sbjct:    3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDI 110          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y2081_STAAM1.461e-1842.06Probable DEAD-box ATP-dependent RNA helicase SAV20... [more]
Y2072_STAAC1.461e-1842.06Probable DEAD-box ATP-dependent RNA helicase SACOL... [more]
Y2037_STAA31.461e-1842.06Probable DEAD-box ATP-dependent RNA helicase SAUSA... [more]
Y2004_STAAW1.461e-1842.06Probable DEAD-box ATP-dependent RNA helicase MW200... [more]
Y1985_STAAS1.461e-1842.06Probable DEAD-box ATP-dependent RNA helicase SAS19... [more]
Y1885_STAAN1.461e-1842.06Probable DEAD-box ATP-dependent RNA helicase SA188... [more]
RHLE_ECOLI1.461e-1842.61ATP-dependent RNA helicase rhlE OS=Escherichia col... [more]
DEAD_HAEIN1.908e-1851.72Cold-shock DEAD box protein A homolog OS=Haemophil... [more]
Y1965_STAAB2.492e-1842.06Probable DEAD-box ATP-dependent RNA helicase SAB19... [more]
CSHA_GEOKA4.251e-1841.67DEAD-box ATP-dependent RNA helicase cshA OS=Geobac... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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