FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6024 contig Ccv1_Contig6024:11..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28
Identity = 55/115 (47.83%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  273 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            T  +  +F  LG+ +   + C+ +G + PTP+Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L E P     L++ PTRELA+Q+++ F++LGS +++RC V+VGGMD++
Sbjct:   47 TRPAPKSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMV 161          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.918e-28
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 3
Query:  285 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            T +F  LG+ E   + C+ L  ++PTP+Q   IP  L+G+DV+G+A+TGSGKTAAFALPIL  L E P  +  LV+ PTRELA Q+ + F+ALG+ + LRC VVVGG+D++
Sbjct:  109 TKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMV 219          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.918e-28
Identity = 61/127 (48.03%), Postives = 84/127 (66.14%), Query Frame = 3
Query:  249 TNPDPNSTTTDST----VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            + P PN   + S     VTF  LGL+   +     + +++PT +Q  C+  IL G+D +G A+TGSGKT AFALPI+ R+A DP+GV A+V+TPTRELAYQL+EQF  +G  L L    +VGGMD++
Sbjct:  135 SKPQPNGLASASKPSADVTFESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLGLTTATIVGGMDMM 261          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.918e-28
Identity = 63/148 (42.57%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  213 SKNAKTAQLEKFTNPDPNSTTTDSTV--------------TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            S+  K + L     PD N+   D                 +F+ LGLA W V +   + +RRPT +Q  CIP+IL+G+D +G ++TGSGKT AFA PILHR +EDP+G+ A+V+TPTRELA Q+ EQFKA+ +   L+  ++ GG ++
Sbjct:   67 SRIKKKSDLSAAKGPDRNADQPDPVTAKDAFAMGLQSMDSSFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEM 214          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.009e-27
Identity = 62/138 (44.93%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  249 TNPDPNSTTTDSTV---------------TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            + P  NST  DS                 TF  LG+ +   + C+ LG + PTP+Q   IP  L+ +D++G+A+TGSGKTAAFALPIL  L + P  + ALV+ PTRELA Q+A+ F+ALGS + LRC +++GGMD++
Sbjct:   62 STPATNSTEEDSVTLDVAPEQEEVETVKKTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMV 199          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.009e-27
Identity = 56/118 (47.46%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  264 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            +S T  +  +F  LG+ +   + C  +G + PTP+Q   IP  L+ +D++GLA+TGSGKTAAFALPIL  L + P     LV+ PTRELA+Q+++ F+ALGS +++RC V+VGGMD++
Sbjct:   45 SSETKPAPKSFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMV 162          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.009e-27
Identity = 57/111 (51.35%), Postives = 80/111 (72.07%), Query Frame = 3
Query:  285 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            T +F  LG+ +   + C+ LG + PTP+Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L   P  +  L++ PTRELA Q++E F+ALGS + +RC V+VGGMD++
Sbjct:   58 TKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMV 168          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.249e-27
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            TFA LG+ E     C+ LG +  TP+QT  IP  L GKD++GLA+TGSGKTAAF LPIL  L + P     L++ PTRELAYQ+++Q  ALGS ++++C  +VGGMD++
Sbjct:  116 TFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMV 224          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae GN=RRP3 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.937e-27
Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = 3
Query:  144 PLFAKPKSKTRSKXXXXXXXXXXSKNAKTAQLEKFTNPDPNSTTTDSTV-TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            P   KP ++ +                ++A LE+   P    T  D+   TF  LG+ +   + C++L  + PTP+Q   IP  L+G+D++GLA+TGSGKTAAFALP+L  L + P  +  LV+ PTRELA Q+ + F+ALGS + LRC V+VGG+D++
Sbjct:   14 PRNTKPVAQEKPARAEPKPSSDEESEEESATLEE---PSAEETAVDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQPLFGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMV 169          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.937e-27
Identity = 56/109 (51.38%), Postives = 83/109 (76.15%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            +F+ LG++ W + T K L +  PT +Q   I +ILEG++ +G A+TGSGKTAAFALPI+ + ++DP G+ AL++TPTRELA Q+ EQF ALG+ L+L+  ++VGGMD++
Sbjct:    8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMI 116          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_NEOFI4.531e-2847.83ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
RRP3_MAGGR5.918e-2852.25ATP-dependent rRNA helicase RRP3 OS=Magnaporthe gr... [more]
DBP8_CRYNE5.918e-2848.03ATP-dependent RNA helicase DBP8 OS=Cryptococcus ne... [more]
DBP8_COCIM5.918e-2842.57ATP-dependent RNA helicase DBP8 OS=Coccidioides im... [more]
RRP3_NEUCR1.009e-2744.93ATP-dependent rRNA helicase rrp-3 OS=Neurospora cr... [more]
RRP3_ASPCL1.009e-2747.46ATP-dependent rRNA helicase rrp3 OS=Aspergillus cl... [more]
RRP3_AJECN1.009e-2751.35ATP-dependent rRNA helicase RRP3 OS=Ajellomyces ca... [more]
RRP3_PHANO2.249e-2752.29ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria ... [more]
RRP3_GIBZE2.937e-2740.25ATP-dependent rRNA helicase RRP3 OS=Gibberella zea... [more]
DBP8_SCHPO2.937e-2751.38ATP-dependent RNA helicase dbp8 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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