FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28 Identity = 55/115 (47.83%), Postives = 83/115 (72.17%), Query Frame = 3 Query: 273 TTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 T + +F LG+ + + C+ +G + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E P L++ PTRELA+Q+++ F++LGS +++RC V+VGGMD++ Sbjct: 47 TRPAPKSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMV 161
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.918e-28 Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 3 Query: 285 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 T +F LG+ E + C+ L ++PTP+Q IP L+G+DV+G+A+TGSGKTAAFALPIL L E P + LV+ PTRELA Q+ + F+ALG+ + LRC VVVGG+D++ Sbjct: 109 TKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMV 219
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.918e-28 Identity = 61/127 (48.03%), Postives = 84/127 (66.14%), Query Frame = 3 Query: 249 TNPDPNSTTTDST----VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 + P PN + S VTF LGL+ + + +++PT +Q C+ IL G+D +G A+TGSGKT AFALPI+ R+A DP+GV A+V+TPTRELAYQL+EQF +G L L +VGGMD++ Sbjct: 135 SKPQPNGLASASKPSADVTFESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLGLTTATIVGGMDMM 261
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.918e-28 Identity = 63/148 (42.57%), Postives = 91/148 (61.49%), Query Frame = 3 Query: 213 SKNAKTAQLEKFTNPDPNSTTTDSTV--------------TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 S+ K + L PD N+ D +F+ LGLA W V + + +RRPT +Q CIP+IL+G+D +G ++TGSGKT AFA PILHR +EDP+G+ A+V+TPTRELA Q+ EQFKA+ + L+ ++ GG ++ Sbjct: 67 SRIKKKSDLSAAKGPDRNADQPDPVTAKDAFAMGLQSMDSSFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEM 214
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.009e-27 Identity = 62/138 (44.93%), Postives = 87/138 (63.04%), Query Frame = 3 Query: 249 TNPDPNSTTTDSTV---------------TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 + P NST DS TF LG+ + + C+ LG + PTP+Q IP L+ +D++G+A+TGSGKTAAFALPIL L + P + ALV+ PTRELA Q+A+ F+ALGS + LRC +++GGMD++ Sbjct: 62 STPATNSTEEDSVTLDVAPEQEEVETVKKTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMV 199
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.009e-27 Identity = 56/118 (47.46%), Postives = 83/118 (70.34%), Query Frame = 3 Query: 264 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 +S T + +F LG+ + + C +G + PTP+Q IP L+ +D++GLA+TGSGKTAAFALPIL L + P LV+ PTRELA+Q+++ F+ALGS +++RC V+VGGMD++ Sbjct: 45 SSETKPAPKSFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMV 162
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.009e-27 Identity = 57/111 (51.35%), Postives = 80/111 (72.07%), Query Frame = 3 Query: 285 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 T +F LG+ + + C+ LG + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L P + L++ PTRELA Q++E F+ALGS + +RC V+VGGMD++ Sbjct: 58 TKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMV 168
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 2.249e-27 Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 TFA LG+ E C+ LG + TP+QT IP L GKD++GLA+TGSGKTAAF LPIL L + P L++ PTRELAYQ+++Q ALGS ++++C +VGGMD++ Sbjct: 116 TFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMV 224
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae GN=RRP3 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.937e-27 Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = 3 Query: 144 PLFAKPKSKTRSKXXXXXXXXXXSKNAKTAQLEKFTNPDPNSTTTDSTV-TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 P KP ++ + ++A LE+ P T D+ TF LG+ + + C++L + PTP+Q IP L+G+D++GLA+TGSGKTAAFALP+L L + P + LV+ PTRELA Q+ + F+ALGS + LRC V+VGG+D++ Sbjct: 14 PRNTKPVAQEKPARAEPKPSSDEESEEESATLEE---PSAEETAVDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQPLFGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMV 169
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.937e-27 Identity = 56/109 (51.38%), Postives = 83/109 (76.15%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 +F+ LG++ W + T K L + PT +Q I +ILEG++ +G A+TGSGKTAAFALPI+ + ++DP G+ AL++TPTRELA Q+ EQF ALG+ L+L+ ++VGGMD++ Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMI 116 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |