FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_PICGU (ATP-dependent RNA helicase DBP8 OS=Pichia guilliermondii GN=DBP8 PE=3 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 2.937e-27 Identity = 54/110 (49.09%), Postives = 83/110 (75.45%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 ++F LG+++W ++ + +R PT +Q CIP+IL G+D +G A+TGSGKT AFA P++ + +EDP+G+ LV+TPTRELA Q+AEQF ALG+ ++++ VVVGG D++ Sbjct: 1 MSFKDLGVSKWLLEALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPFGIYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMV 110
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_YEAST (ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae GN=DBP8 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.836e-27 Identity = 56/108 (51.85%), Postives = 81/108 (75.00%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 F LGL++W ++ + + + +PT +Q CIPKILEG+D +G A+TGSGKT AFA P+L + +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R V+VGG ++ Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIV 111
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_YEAS7 (ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP8 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.836e-27 Identity = 56/108 (51.85%), Postives = 81/108 (75.00%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 F LGL++W ++ + + + +PT +Q CIPKILEG+D +G A+TGSGKT AFA P+L + +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R V+VGG ++ Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIV 111
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_ASHGO (ATP-dependent RNA helicase DBP8 OS=Ashbya gossypii GN=DBP8 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.010e-27 Identity = 57/114 (50.00%), Postives = 82/114 (71.93%), Query Frame = 3 Query: 276 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 +DS TF LG+A+W + + + +PT +Q CIP+IL G+D +G A+TGSGKT AFA P+L + + DP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG D++ Sbjct: 2 SDSNSTFKDLGVAKWLAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFAAPMLTKWSADPCGMFGIVLTPTRELAMQIAEQFTALGSVMNIRVALVVGGEDIV 115
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_GIBZE (ATP-dependent RNA helicase DBP8 OS=Gibberella zeae GN=DBP8 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27 Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 3 Query: 276 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 TD TF+ L + W VQ+ + + ++RPT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL + +EDP + A+V+TPTRELA Q+ EQFKA+ S L+ +V GG D+ Sbjct: 112 TDPNTTFSALDVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFAVPILQKWSEDPTAIFAVVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDM 224
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27 Identity = 56/109 (51.38%), Postives = 79/109 (72.48%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 TF LG+ E + C+ +G + PTP+Q IP L+G+D++GLA+TGSGKTAAFALPIL L E P LV+ PTRELAYQ+++ F++LG+ + +R V+VGGMD++ Sbjct: 49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMV 157
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.116e-26 Identity = 55/110 (50.00%), Postives = 81/110 (73.64%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 ++F LG+++W + + + PT +Q+ CIPKIL+G D +G A+TGSGKT AFA P+L + +EDP G+ LV+TPTRELA Q+AEQF ALGS ++++ V+VGG D++ Sbjct: 1 MSFEELGVSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPSGIYGLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIV 110
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.458e-26 Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 3 Query: 258 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 +P+ + +F LGL E + C +G + PT +Q IP L+G+D++GLA+TGSGKTAAFALPIL L + P LV+ PTRELAYQ+++ F+ LGS + +R V+VGGMD++ Sbjct: 42 EPSEAPKQAPKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMV 161
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX47_DICDI (Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum GN=ddx47 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.458e-26 Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 3 Query: 216 KNAKTAQLEKFTNPDPNSTTTDS-----TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611 K + ++E+F N + + VTF LG+ + C +LG +P +Q IP L+G+D++GLAQTGSGKTAAF +P+L +L E P G+ L + PTRELAYQ+A+QF A+GS + ++ V+VGG+D Sbjct: 90 KEEEEKEIEEFINNTNQKKSEEEEKKYENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGID 226
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 1.458e-26 Identity = 55/110 (50.00%), Postives = 79/110 (71.82%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 ++F LG++ W + + + PT +Q+ CIPKIL G D +G A+TGSGKT AFA P+L + +EDP+G+ LV+TPTRELA Q+AEQF ALG+ ++++ VVVGG D + Sbjct: 1 MSFEDLGVSRWLSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLVLTPTRELALQIAEQFAALGASMNIKISVVVGGEDFV 110 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |