FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_PICGU (ATP-dependent RNA helicase DBP8 OS=Pichia guilliermondii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.937e-27
Identity = 54/110 (49.09%), Postives = 83/110 (75.45%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            ++F  LG+++W ++    + +R PT +Q  CIP+IL G+D +G A+TGSGKT AFA P++ + +EDP+G+  LV+TPTRELA Q+AEQF ALG+ ++++  VVVGG D++
Sbjct:    1 MSFKDLGVSKWLLEALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPFGIYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMV 110          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_YEAST (ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae GN=DBP8 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.836e-27
Identity = 56/108 (51.85%), Postives = 81/108 (75.00%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            F  LGL++W  ++ + + + +PT +Q  CIPKILEG+D +G A+TGSGKT AFA P+L + +EDP G+  +V+TPTRELA Q+AEQF ALGS +++R  V+VGG  ++
Sbjct:    4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIV 111          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_YEAS7 (ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP8 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.836e-27
Identity = 56/108 (51.85%), Postives = 81/108 (75.00%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            F  LGL++W  ++ + + + +PT +Q  CIPKILEG+D +G A+TGSGKT AFA P+L + +EDP G+  +V+TPTRELA Q+AEQF ALGS +++R  V+VGG  ++
Sbjct:    4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIV 111          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_ASHGO (ATP-dependent RNA helicase DBP8 OS=Ashbya gossypii GN=DBP8 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.010e-27
Identity = 57/114 (50.00%), Postives = 82/114 (71.93%), Query Frame = 3
Query:  276 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            +DS  TF  LG+A+W  +    + + +PT +Q  CIP+IL G+D +G A+TGSGKT AFA P+L + + DP G+  +V+TPTRELA Q+AEQF ALGS +++R  +VVGG D++
Sbjct:    2 SDSNSTFKDLGVAKWLAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFAAPMLTKWSADPCGMFGIVLTPTRELAMQIAEQFTALGSVMNIRVALVVGGEDIV 115          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_GIBZE (ATP-dependent RNA helicase DBP8 OS=Gibberella zeae GN=DBP8 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  276 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            TD   TF+ L +  W VQ+ + + ++RPT +Q  CIP+IL+G+D +G ++TGSGKT AFA+PIL + +EDP  + A+V+TPTRELA Q+ EQFKA+ S   L+  +V GG D+
Sbjct:  112 TDPNTTFSALDVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFAVPILQKWSEDPTAIFAVVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDM 224          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 56/109 (51.38%), Postives = 79/109 (72.48%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            TF  LG+ E   + C+ +G + PTP+Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L E P     LV+ PTRELAYQ+++ F++LG+ + +R  V+VGGMD++
Sbjct:   49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMV 157          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.116e-26
Identity = 55/110 (50.00%), Postives = 81/110 (73.64%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            ++F  LG+++W  +    + +  PT +Q+ CIPKIL+G D +G A+TGSGKT AFA P+L + +EDP G+  LV+TPTRELA Q+AEQF ALGS ++++  V+VGG D++
Sbjct:    1 MSFEELGVSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPSGIYGLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIV 110          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.458e-26
Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 3
Query:  258 DPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            +P+     +  +F  LGL E   + C  +G + PT +Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L + P     LV+ PTRELAYQ+++ F+ LGS + +R  V+VGGMD++
Sbjct:   42 EPSEAPKQAPKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMV 161          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX47_DICDI (Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum GN=ddx47 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.458e-26
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  216 KNAKTAQLEKFTNPDPNSTTTDS-----TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611
            K  +  ++E+F N      + +       VTF  LG+    +  C +LG  +P  +Q   IP  L+G+D++GLAQTGSGKTAAF +P+L +L E P G+  L + PTRELAYQ+A+QF A+GS + ++  V+VGG+D
Sbjct:   90 KEEEEKEIEEFINNTNQKKSEEEEKKYENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGID 226          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.458e-26
Identity = 55/110 (50.00%), Postives = 79/110 (71.82%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            ++F  LG++ W  +    + +  PT +Q+ CIPKIL G D +G A+TGSGKT AFA P+L + +EDP+G+  LV+TPTRELA Q+AEQF ALG+ ++++  VVVGG D +
Sbjct:    1 MSFEDLGVSRWLSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLVLTPTRELALQIAEQFAALGASMNIKISVVVGGEDFV 110          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP8_PICGU2.937e-2749.09ATP-dependent RNA helicase DBP8 OS=Pichia guillier... [more]
DBP8_YEAST3.836e-2751.85ATP-dependent RNA helicase DBP8 OS=Saccharomyces c... [more]
DBP8_YEAS73.836e-2751.85ATP-dependent RNA helicase DBP8 OS=Saccharomyces c... [more]
DBP8_ASHGO5.010e-2750.00ATP-dependent RNA helicase DBP8 OS=Ashbya gossypii... [more]
DBP8_GIBZE6.543e-2749.56ATP-dependent RNA helicase DBP8 OS=Gibberella zeae... [more]
RRP3_ASPNC8.545e-2751.38ATP-dependent rRNA helicase rrp3 OS=Aspergillus ni... [more]
DBP8_DEBHA1.116e-2650.00ATP-dependent RNA helicase DBP8 OS=Debaryomyces ha... [more]
RRP3_ASPOR1.458e-2646.67ATP-dependent rRNA helicase rrp3 OS=Aspergillus or... [more]
DDX47_DICDI1.458e-2642.34Probable ATP-dependent RNA helicase ddx47 OS=Dicty... [more]
DBP8_PICST1.458e-2650.00ATP-dependent RNA helicase DBP8 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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