FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6024 contig Ccv1_Contig6024:11..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.904e-26
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            V F+ LG+    V+ C  +G + PTP+Q   IP+ L+ +DV+GLAQTGSGKTAAF +PIL  L ++P    A V+ PTRELAYQ+++Q +ALGS + +R   +VGGMD++
Sbjct:  104 VEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMM 213          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.904e-26
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  216 KNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            K   T ++EK    D    +      FA LG+++     C+ LG  +P+ +Q   +P  L+GKDV+GLA+TGSGKT AFA+P+L  L + P     LV+TPTRELA+Q+ +QF+ALGSG+ L   V+VGG+D+
Sbjct:   26 KKVVTEEIEKDDEEDVKEKS------FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDM 152          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_VANPO (ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP8 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.486e-26
Identity = 55/108 (50.93%), Postives = 80/108 (74.07%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            F  LGL+ W V++   + +  PT +Q HCIP+IL+G+D +G A+TGSGKT AFA P+L + ++DP G+  +V+TPTRELA Q+AEQF ALGS +++R  +VVGG  ++
Sbjct:    4 FKSLGLSRWLVESLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPMLSQWSDDPSGMFGVVLTPTRELAIQIAEQFTALGSSMNIRVCLVVGGESIV 111          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH10_ARATH (DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.247e-26
Identity = 62/119 (52.10%), Postives = 79/119 (66.39%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY------------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611
            TFA LG+ E  V+ C+ LG + P+ +Q   +P  LEGKDV+GLAQTGSGKT AFA+PIL  L E  Y               A V++PTRELA Q+AEQF+ALG+ + LRC V+VGG+D
Sbjct:   10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGID 128          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_YARLI (ATP-dependent RNA helicase DBP8 OS=Yarrowia lipolytica GN=DBP8 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.241e-26
Identity = 52/110 (47.27%), Postives = 81/110 (73.64%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            ++F  LGL EW  ++   + + +P+ +Q  CIP+I++GKD +G A+TGSGKT AFA P+L   ++DP G+  LV+TPTRELA Q+AEQF ALG+ +++R  ++ GG+D++
Sbjct:    1 MSFTDLGLPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAFAAPMLAEWSKDPCGIFGLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMV 110          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_CANGA (ATP-dependent RNA helicase DBP8 OS=Candida glabrata GN=DBP8 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.241e-26
Identity = 56/108 (51.85%), Postives = 82/108 (75.93%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            F  LGL++W V++   + +R PT +Q+ CIP+IL+G+D +G A+TGSGKT AFA P+L + +EDP G+  +V+TPTRELA Q+AEQF ALGS +++R  +VVGG  ++
Sbjct:   11 FRQLGLSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPMLTQWSEDPTGMFGIVLTPTRELAMQIAEQFTALGSYMNIRVALVVGGESIV 118          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_CANAL (ATP-dependent RNA helicase DBP8 OS=Candida albicans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.539e-26
Identity = 54/110 (49.09%), Postives = 81/110 (73.64%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            ++F  LG+A+W  ++   + +  PT +Q+ CIP IL+G D +G A+TGSGKT AFA P+L + +EDP+G+  L++TPTRELA Q+AEQF ALG+ ++++  VVVGG D +
Sbjct:    1 MSFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFV 110          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 7.234e-26
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            TF+ L L    ++  ++L   +PTP+Q+  IP  LEGKD++GLAQTGSGKTAAFA+PIL  L E      ALV+ PTRELAYQ+ E F ALGSG+ +R   +VGGMD++
Sbjct:   65 TFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMM 173          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_YEAST (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae GN=RRP3 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 9.448e-26
Identity = 59/134 (44.03%), Postives = 84/134 (62.69%), Query Frame = 3
Query:  216 KNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            K  K+      +  + N+   +S  +F+ L L    +Q CK L   +PTP+Q+  IP  LEG D++GLAQTGSGKTAAFA+PIL+RL  D     A ++ PTRELA Q+ E F +LGS + +R   +VGGM+++
Sbjct:   57 KVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.448e-26
Identity = 59/134 (44.03%), Postives = 84/134 (62.69%), Query Frame = 3
Query:  216 KNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            K  K+      +  + N+   +S  +F+ L L    +Q CK L   +PTP+Q+  IP  LEG D++GLAQTGSGKTAAFA+PIL+RL  D     A ++ PTRELA Q+ E F +LGS + +R   +VGGM+++
Sbjct:   57 KVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_USTMA1.904e-2650.00ATP-dependent rRNA helicase RRP3 OS=Ustilago maydi... [more]
DDX47_CAEEL1.904e-2644.36Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]
DBP8_VANPO2.486e-2650.93ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma... [more]
RH10_ARATH3.247e-2652.10DEAD-box ATP-dependent RNA helicase 10 OS=Arabidop... [more]
DBP8_YARLI4.241e-2647.27ATP-dependent RNA helicase DBP8 OS=Yarrowia lipoly... [more]
DBP8_CANGA4.241e-2651.85ATP-dependent RNA helicase DBP8 OS=Candida glabrat... [more]
DBP8_CANAL5.539e-2649.09ATP-dependent RNA helicase DBP8 OS=Candida albican... [more]
RRP3_PICGU7.234e-2654.13ATP-dependent rRNA helicase RRP3 OS=Pichia guillie... [more]
RRP3_YEAST9.448e-2644.03ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]
RRP3_YEAS79.448e-2644.03ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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