FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.904e-26 Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 V F+ LG+ V+ C +G + PTP+Q IP+ L+ +DV+GLAQTGSGKTAAF +PIL L ++P A V+ PTRELAYQ+++Q +ALGS + +R +VGGMD++ Sbjct: 104 VEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMM 213
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.904e-26 Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 3 Query: 216 KNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 K T ++EK D + FA LG+++ C+ LG +P+ +Q +P L+GKDV+GLA+TGSGKT AFA+P+L L + P LV+TPTRELA+Q+ +QF+ALGSG+ L V+VGG+D+ Sbjct: 26 KKVVTEEIEKDDEEDVKEKS------FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDM 152
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_VANPO (ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP8 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.486e-26 Identity = 55/108 (50.93%), Postives = 80/108 (74.07%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 F LGL+ W V++ + + PT +Q HCIP+IL+G+D +G A+TGSGKT AFA P+L + ++DP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG ++ Sbjct: 4 FKSLGLSRWLVESLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPMLSQWSDDPSGMFGVVLTPTRELAIQIAEQFTALGSSMNIRVCLVVGGESIV 111
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH10_ARATH (DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 3.247e-26 Identity = 62/119 (52.10%), Postives = 79/119 (66.39%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY------------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611 TFA LG+ E V+ C+ LG + P+ +Q +P LEGKDV+GLAQTGSGKT AFA+PIL L E Y A V++PTRELA Q+AEQF+ALG+ + LRC V+VGG+D Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGID 128
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_YARLI (ATP-dependent RNA helicase DBP8 OS=Yarrowia lipolytica GN=DBP8 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.241e-26 Identity = 52/110 (47.27%), Postives = 81/110 (73.64%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 ++F LGL EW ++ + + +P+ +Q CIP+I++GKD +G A+TGSGKT AFA P+L ++DP G+ LV+TPTRELA Q+AEQF ALG+ +++R ++ GG+D++ Sbjct: 1 MSFTDLGLPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAFAAPMLAEWSKDPCGIFGLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMV 110
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_CANGA (ATP-dependent RNA helicase DBP8 OS=Candida glabrata GN=DBP8 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.241e-26 Identity = 56/108 (51.85%), Postives = 82/108 (75.93%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 F LGL++W V++ + +R PT +Q+ CIP+IL+G+D +G A+TGSGKT AFA P+L + +EDP G+ +V+TPTRELA Q+AEQF ALGS +++R +VVGG ++ Sbjct: 11 FRQLGLSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPMLTQWSEDPTGMFGIVLTPTRELAMQIAEQFTALGSYMNIRVALVVGGESIV 118
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_CANAL (ATP-dependent RNA helicase DBP8 OS=Candida albicans GN=DBP8 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 5.539e-26 Identity = 54/110 (49.09%), Postives = 81/110 (73.64%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 ++F LG+A+W ++ + + PT +Q+ CIP IL+G D +G A+TGSGKT AFA P+L + +EDP+G+ L++TPTRELA Q+AEQF ALG+ ++++ VVVGG D + Sbjct: 1 MSFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFV 110
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 7.234e-26 Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 TF+ L L ++ ++L +PTP+Q+ IP LEGKD++GLAQTGSGKTAAFA+PIL L E ALV+ PTRELAYQ+ E F ALGSG+ +R +VGGMD++ Sbjct: 65 TFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMM 173
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_YEAST (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae GN=RRP3 PE=1 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 9.448e-26 Identity = 59/134 (44.03%), Postives = 84/134 (62.69%), Query Frame = 3 Query: 216 KNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 K K+ + + N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSGKTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++ Sbjct: 57 KVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 9.448e-26 Identity = 59/134 (44.03%), Postives = 84/134 (62.69%), Query Frame = 3 Query: 216 KNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 K K+ + + N+ +S +F+ L L +Q CK L +PTP+Q+ IP LEG D++GLAQTGSGKTAAFA+PIL+RL D A ++ PTRELA Q+ E F +LGS + +R +VGGM+++ Sbjct: 57 KVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMM 190 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |